Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

Autor: Suen Garret, Zumbihl Robert, Rouy Zoé, Roche David, Goodrich-Blair Heidi, Forst Steve, Calteau Alexandra, Ogier Jean-Claude, Givaudan Alain, Tailliez Patrick, Médigue Claudine, Gaudriault Sophie

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 568 (2010)

Abstract Background Flexible genomes facilitate bacterial evolution and are classically organized into polymorphic strain-specific segments called regions of genomic plasticity (RGPs). Using a new web tool, RGPFinder, we investigated plasticity units

Externí odkaz: https://doaj.org/article/d82f4f87f8824f499f3d144120f22dc4

A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.

Autor: Bremer, Erhard¹ (AUTHOR), Calteau, Alexandra² (AUTHOR), Danchin, Antoine³ (AUTHOR) adanchin@hku.hk, Harwood, Colin⁴ (AUTHOR), Helmann, John D.⁵ (AUTHOR), Médigue, Claudine² (AUTHOR), Palsson, Bernhard O.⁶ (AUTHOR), Sekowska, Agnieszka⁷ (AUTHOR), Vallenet, David² (AUTHOR), Zuniga, Abril⁸ (AUTHOR), Zuniga, Cristal⁹ (AUTHOR)

Publikováno v: Microbial Biotechnology. Jun2023, Vol. 16 Issue 6, p1203-1231. 29p.

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

Autor: Shih, Patrick M., Wu, Dongying, Latifi, Amel, Axen, Seth D., Fewer, David P., Talla, Emmanuel, Calteau, Alexandra, Cai, Fei, de Marsac, Nicole Tandeau, Rippka, Rosmarie, Herdman, Michael, Sivonen, Kaarina, Coursin, Therese, Laurent, Thierry, Goodwin, Lynne, Nolan, Matt, Davenport, Karen W., Han, Cliff S., Rubin, Edward M., Eisen, Jonathan A., Woyke, Tanja, Gugger, Muriel, Kerfeld, Cheryl A.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2013 Jan . 110(3), 1053-1058.

Externí odkaz: https://www.jstor.org/stable/42006403

A community resource for paired genomic and metabolomic data mining

Autor: Schorn, Michelle A., Verhoeven, Stefan, Ridder, Lars, Huber, Florian, Acharya, Deepa D., Aksenov, Alexander A., Aleti, Gajender, Moghaddam, Jamshid Amiri, Aron, Allegra T., Aziz, Saefuddin, Bauermeister, Anelize, Bauman, Katherine D., Baunach, Martin, Beemelmanns, Christine, Beman, J. Michael, Berlanga-Clavero, María Victoria, Blacutt, Alex A., Bode, Helge B., Boullie, Anne, Brejnrod, Asker, Bugni, Tim S., Calteau, Alexandra, Cao, Liu, Carrión, Víctor J., Castelo-Branco, Raquel, Chanana, Shaurya, Chase, Alexander B., Chevrette, Marc G., Costa-Lotufo, Leticia V., Crawford, Jason M., Currie, Cameron R., Cuypers, Bart, Dang, Tam, de Rond, Tristan, Demko, Alyssa M., Dittmann, Elke, Du, Chao, Drozd, Christopher, Dujardin, Jean-Claude, Dutton, Rachel J., Edlund, Anna, Fewer, David P., Garg, Neha, Gauglitz, Julia M., Gentry, Emily C., Gerwick, Lena, Glukhov, Evgenia, Gross, Harald, Gugger, Muriel, Guillén Matus, Dulce G., Helfrich, Eric J.N., Hempel, Benjamin-Florian, Hur, Jae-Seoun, Iorio, Marianna, Jensen, Paul R., Kang, Kyo Bin, Kaysser, Leonhard, Kelleher, Neil L., Kim, Chung Sub, Kim, Hyun-Ki, Koester, Irina, König, Gabriele M., Leao, Tiago, Lee, Seoung Rak, Lee, Yi-Yuan, Li, Xuanji, Little, Jessica C., Maloney, Katherine N., Männle, Daniel, Martin H, Christian, McAvoy, Andrew C., Metcalf, Willam W., Mohimani, Hosein, Molina-Santiago, Carlos, Moore, Bradley S., Mullowney, Michael W., Muskat, Mitchell, Nothias, Louis Felix, O’Neill, Ellis C., Parkinson, Elizabeth I., Petras, Daniel, Piel, Jörn, Pierce, Emily C., Pires, Karine, Reher, Raphael, Romero, Diego, Roper, M. Caroline, Rust, Michael, Saad, Hamada, Saenz, Carmen, Sanchez, Laura M., Sørensen, Søren J., Sosio, Margherita, Süssmuth, Roderich D., Sweeney, Douglas, Tahlan, Kapil, Thomson, Regan J., Tobias, Nicholas J., Trindade-Silva, Amaro E., van Wezel, Gilles P., Wang, Mingxun, Weldon, Kelly C., Zhang, Fan, Ziemert, Nadine, Duncan, Katherine R., Crüsemann, Max, Rogers, Simon, Dorrestein, Pieter C., Medema, Marnix H., van der Hooft, Justin J.J.

Publikováno v: Nature Chemical Biology, 17 (4)

The structural complexity and bioactivity of natural products often depend on enzymatic redox tailoring steps. This is exemplified by the generation of the bisbenzannulated [5,6]-spiroketal pharmacophore in the bacterial rubromycin family of aromatic

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::42db8c389e22a43f8fa99e5594e5ce3c
https://hdl.handle.net/20.500.11850/526678

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