Zobrazeno 1 - 10
of 28
pro vyhledávání: '"Caleb Easterly"'
Autor:
Ray Sajulga, Caleb Easterly, Michael Riffle, Bart Mesuere, Thilo Muth, Subina Mehta, Praveen Kumar, James Johnson, Bjoern Andreas Gruening, Henning Schiebenhoefer, Carolin A Kolmeder, Stephan Fuchs, Brook L Nunn, Joel Rudney, Timothy J Griffin, Pratik D Jagtap
Publikováno v:
PLoS ONE, Vol 15, Iss 11, p e0241503 (2020)
To gain a thorough appreciation of microbiome dynamics, researchers characterize the functional relevance of expressed microbial genes or proteins. This can be accomplished through metaproteomics, which characterizes the protein expression of microbi
Externí odkaz:
https://doaj.org/article/9da73087023c4018882f7a4da3170b7c
Autor:
James E. Johnson, Praveen Kumar, Caleb Easterly, Mark Esler, Subina Mehta, Arthur C. Eschenlauer, Adrian D. Hegeman, Pratik D. Jagtap, Timothy J. Griffin
Publikováno v:
F1000Research, Vol 7 (2019)
Galaxy provides an accessible platform where multi-step data analysis workflows integrating disparate software can be run, even by researchers with limited programming expertise. Applications of such sophisticated workflows are many, including those
Externí odkaz:
https://doaj.org/article/604901802b674d0b9dc8eb8308629d96
Publikováno v:
Cancer Research. 83:LB140-LB140
Background: Lesbian, gay, bisexual, transgender, queer, and other sexual and gender minority (LGBTQ+) individuals are twice as likely to live in poverty and carry a greater cancer burden than non-LGBTQ+ individuals. Crowdfunding, a type of online fun
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a8b8c7f1466f9735be62c2b16390db33
https://doi.org/10.1158/1538-7445.am2023-lb140
https://doi.org/10.1158/1538-7445.am2023-lb140
Autor:
James E. Johnson, Praveen Kumar, Caleb Easterly, Mark Esler, Subina Mehta, Arthur C. Eschenlauer, Adrian D. Hegeman, Pratik D. Jagtap, Timothy J. Griffin
Publikováno v:
F1000Research, Vol 7 (2018)
Galaxy provides an accessible platform where multi-step data analysis workflows integrating disparate software can be run, even by researchers with limited programming expertise. Applications of such sophisticated workflows are many, including those
Externí odkaz:
https://doaj.org/article/403fc11e965244a3a743aeaef8ae3bd7
Autor:
Ray Sajulga, Timothy J. Griffin, Pratik D. Jagtap, Brook L. Nunn, James E. Johnson, Praveen Kumar, Caleb Easterly, Subina Mehta
Publikováno v:
Journal of Proteome Research. 19:2772-2785
Multi-omics approaches focused on mass-spectrometry (MS)-based data, such as metaproteomics, utilize genomic and/or transcriptomic sequencing data to generate a comprehensive protein sequence database. These databases can be very large, containing mi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ff75161621c04ba3e8aeea6e5b4fdef1
https://doi.org/10.1021/acs.jproteome.0c00260
https://doi.org/10.1021/acs.jproteome.0c00260
Autor:
Subina Mehta, Pratik D. Jagtap, Praveen Kumar, Timothy J. Griffin, James E. Johnson, Caleb Easterly, Shane L. Hubler
Publikováno v:
Journal of Proteome Research. 19:161-173
Workflows for large-scale (MS)-based shotgun proteomics can potentially lead to costly errors in the form of incorrect peptide-spectrum matches (PSMs). To improve the robustness of these workflows, we have investigated the use of the precursor mass d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bbc631982a196bed06afdb65db1d71de
https://doi.org/10.1021/acs.jproteome.9b00478
https://doi.org/10.1021/acs.jproteome.9b00478
Autor:
Clemens Blank, Caleb Easterly, Bjoern Gruening, James Johnson, Carolin A. Kolmeder, Praveen Kumar, Damon May, Subina Mehta, Bart Mesuere, Zachary Brown, Joshua E. Elias, W. Judson Hervey, Thomas McGowan, Thilo Muth, Brook L. Nunn, Joel Rudney, Alessandro Tanca, Timothy J. Griffin, Pratik D. Jagtap
Publikováno v:
Proteomes, Vol 6, Iss 1, p 7 (2018)
The impact of microbial communities, also known as the microbiome, on human health and the environment is receiving increased attention. Studying translated gene products (proteins) and comparing metaproteomic profiles may elucidate how microbiomes r
Externí odkaz:
https://doaj.org/article/936ce48bfbba432e8e521b8ae6745693
Publikováno v:
JAMA Pediatr
This survey study evaluates childcare-related employment disruptions before and after COVID-19, accounting for child special health care needs status and sociodemographic factors.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cb411241424aff4d6a871484c82e6670
https://doi.org/10.1001/jamapediatrics.2022.1766
https://doi.org/10.1001/jamapediatrics.2022.1766
Autor:
James R. Johnson, Shane L. Hubler, Joel D. Rudney, Timothy J. Griffin, Pratik D. Jagtap, Ray Sajulga, Subina Mehta, Caleb Easterly, Bart Mesuere, Praveen Kumar
Publikováno v:
MOLECULAR & CELLULAR PROTEOMICS
Microbiome research offers promising insights into the impact of microorganisms on biological systems. Metaproteomics, the study of microbial proteins at the community level, integrates genomic, transcriptomic, and proteomic data to determine the tax
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b5b4ab9d76d642a1c5928a3801b31cea
https://doi.org/10.1074/mcp.ra118.001240
https://doi.org/10.1074/mcp.ra118.001240
Autor:
An Staes, Caleb Easterly, Lennart Martens, Subina Mehta, Pratik D. Jagtap, Francis Impens, Andrea Argentini, Björn Grüning, Timothy J. Griffin
Publikováno v:
Journal of Proteome Research. 18:728-731
moFF is a modular and operating-system-independent tool for quantitative analysis of label-free mass-spectrometry-based proteomics data. The moFF workflow, comprising matching-between-runs and apex quantification, can be applied to any upstream searc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1faa53c567cbef201181e11ebfd1c8c2
https://doi.org/10.1021/acs.jproteome.8b00708
https://doi.org/10.1021/acs.jproteome.8b00708