Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks

Autor: Schäpe, P, Kwon, MJ, Baumann, B, Gutschmann, B, Jung, S, Lenz, S, Nitsche, B, Paege, N, Schütze, T, Cairns, TC, Meyer, V

Publikováno v: Nucleic Acids Research

A significant challenge in our understanding of biological systems is the high number of genes with unknown function in many genomes. The fungal genus Aspergillus contains important pathogens of humans, model organisms, and microbial cell factories.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::96aa3792cc2e40d5fd493d54fe780f8e
http://europepmc.org/articles/PMC6344863

Genome-wide transcription landscape of citric acid producing Aspergillus niger in response to glucose gradient.

Autor: Zheng X; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China.; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, China.; University of Chinese Academy of Sciences, Beijing, China., Du P; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China.; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China., Gao K; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China.; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China., Du Y; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China.; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China., Cairns TC; Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany., Ni X; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China.; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, China., Chen M; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.; School of Biotechnology, East China University of Science and Technology, Shanghai, China., Zhao W; Shan Dong Fuyang Biological Technology Co., Ltd., Dezhou, China., Ma X; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China., Yang H; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China., Zheng P; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China.; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, China.; University of Chinese Academy of Sciences, Beijing, China., Sun J; College of Biotechnology, Tianjin University of Science & Technology, Tianjin, China.; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, China.; University of Chinese Academy of Sciences, Beijing, China.

Publikováno v: Frontiers in bioengineering and biotechnology [Front Bioeng Biotechnol] 2023 Oct 24; Vol. 11, pp. 1282314. Date of Electronic Publication: 2023 Oct 24 (Print Publication: 2023).

Comprehensively dissecting the hub regulation of PkaC on high-productivity and pellet macromorphology in citric acid producing Aspergillus niger.

Autor: Zheng X; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin, 300308, China.; Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China., Cairns TC; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin, 300308, China.; Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.; Institute of Biotechnology, Chair of Applied and Molecular Microbiology, Technische Universität Berlin, Berlin, 13355, Germany., Ni X; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin, 300308, China.; Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China., Zhang L; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin, 300308, China.; Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China., Zhai H; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin, 300308, China., Meyer V; Institute of Biotechnology, Chair of Applied and Molecular Microbiology, Technische Universität Berlin, Berlin, 13355, Germany., Zheng P; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin, 300308, China.; Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China., Sun J; Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West 7th Avenue, Tianjin, 300308, China.; Key Laboratory of Systems Microbial Biotechnology, Chinese Academy of Sciences, Tianjin, 300308, China.; University of Chinese Academy of Sciences, Beijing, 100049, China.; National Technology Innovation Center of Synthetic Biology, Tianjin, 300308, China.

Publikováno v: Microbial biotechnology [Microb Biotechnol] 2022 Jun; Vol. 15 (6), pp. 1867-1882. Date of Electronic Publication: 2022 Feb 25.

Filamentous fungal applications in biotechnology: a combined bibliometric and patentometric assessment.

Autor: Füting P; Chair of Process Systems Engineering, School of Life Sciences Weihenstephan, Technical University of Munich, 85354, Freising, Germany., Barthel L; Chair of Applied and Molecular Microbiology, Faculty III Process Sciences, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany., Cairns TC; Chair of Applied and Molecular Microbiology, Faculty III Process Sciences, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany., Briesen H; Chair of Process Systems Engineering, School of Life Sciences Weihenstephan, Technical University of Munich, 85354, Freising, Germany., Schmideder S; Chair of Process Systems Engineering, School of Life Sciences Weihenstephan, Technical University of Munich, 85354, Freising, Germany. stefan.schmideder@tum.de.

Publikováno v: Fungal biology and biotechnology [Fungal Biol Biotechnol] 2021 Dec 28; Vol. 8 (1), pp. 23. Date of Electronic Publication: 2021 Dec 28.

Something old, something new: challenges and developments in Aspergillus niger biotechnology.

Autor: Cairns TC; Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany., Barthel L; Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany., Meyer V; Chair of Applied and Molecular Microbiology, Institute of Biotechnology, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany.

Publikováno v: Essays in biochemistry [Essays Biochem] 2021 Jul 26; Vol. 65 (2), pp. 213-224.