G4Boost: a machine learning-based tool for quadruplex identification and stability prediction.

Autor: Cagirici, H. Busra¹ (AUTHOR), Budak, Hikmet² (AUTHOR), Sen, Taner Z.¹ (AUTHOR) taner.sen@usda.gov

Publikováno v: BMC Bioinformatics. 6/18/2022, Vol. 23 Issue 1, p1-18. 18p.

Genome-Wide Discovery of G-Quadruplexes in Wheat: Distribution and Putative Functional Roles.

Autor: Cagirici, H. Busra¹, Sen, Taner Z.¹ taner.sen@usda.gov

Publikováno v: G3: Genes | Genomes | Genetics. Jun2020, Vol. 10 Issue 6, p2021-2032. 12p.

Additional file 2 of G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

Autor: Cagirici, H. Busra, Budak, Hikmet, Sen, Taner Z.

Additional file 2: Figure S2. XGBoost decision tree for the G4 structure folding energy. Entire decision tree predicting the folding energy of the G4s shows the readable heuristics derived from these decisions.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7e9a6024513c86f611353c0f584abc33

Lncmachine: A Machine Learning Algorithm For Long Noncoding Rna Annotation In Plants

Autor: Cagirici, H. Busra, Galvez, S., Sen, Taner Z., Budak, Hikmet

Following the elucidation of the critical roles they play in numerous important biological processes, long noncoding RNAs (lncRNAs) have gained vast attention in recent years. Manual annotation of lncRNAs is restricted by known gene annotations and i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=r39c86a4b39b::d3ac7f799040ef3806a53b6e187b4650
https://aperta.ulakbim.gov.tr/record/229882

LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants.

Autor: Cagirici HB; US Department of Agriculture - Agricultural Research Service, Crop Improvement Genetics Research Unit, Western Regional Research Center, 800 Buchanan St, Albany, CA, 94710, USA.; Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla, Istanbul, Turkey., Galvez S; ETSI Informatica, University of Malaga Andalucía Tech., 29071, Malaga, Spain., Sen TZ; US Department of Agriculture - Agricultural Research Service, Crop Improvement Genetics Research Unit, Western Regional Research Center, 800 Buchanan St, Albany, CA, 94710, USA., Budak H; Montana BioAgriculture Inc., Missoula, MT, USA. hikmet.budak@icloud.com.

Publikováno v: Functional & integrative genomics [Funct Integr Genomics] 2021 Mar; Vol. 21 (2), pp. 195-204. Date of Electronic Publication: 2021 Feb 26.