Zobrazeno 1 - 10
of 16
pro vyhledávání: '"C. J. Battey"'
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 11, Iss 1 (2021)
AbstractDimensionality reduction is a common tool for visualization and inference of population structure from genotypes, but popular methods either return too many dimensions for easy plotting (PCA) or fail to preserve global geometry (t-SNE and UMA
Externí odkaz:
https://doaj.org/article/4f31357f702b496ea0ce3644fa390ec4
Autor:
Nicole E. Adams, Ruta R. Bandivadekar, C. J. Battey, Michael W. Clark, Kevin Epperly, Kristen Ruegg, Lisa A. Tell, Rachael A. Bay
Publikováno v:
Molecular Ecology.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a352038975f3f57c9a01fd53c899c082
https://doi.org/10.1111/mec.16928
https://doi.org/10.1111/mec.16928
Autor:
C. J. Battey
Publikováno v:
Evolution. 74:725-739
Levels of genetic differentiation vary widely along the genomes of recently diverged species. What processes cause this variation? Here, I analyze geographic population structure and genome-wide patterns of variation in the Rufous, Allen's, and Calli
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::db8a0f556723d6e1862082ebd97e8484
https://doi.org/10.1111/evo.13888
https://doi.org/10.1111/evo.13888
Autor:
C. J. Battey
Publikováno v:
The American Naturalist. 194:306-315
During range expansions, species can experience rapid population growth if changes in climate or interspecific interactions remove limits on growth rates in novel habitats. Here I document a century of range expansion in the Anna's hummingbird (Calyp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b62c8786ca319f5394cb5ced4c588d87
https://doi.org/10.1086/704249
https://doi.org/10.1086/704249
Autor:
Ethan Linck, C. J. Battey
Publikováno v:
Molecular Ecology Resources. 19:639-647
A common method of minimizing errors in large DNA sequence data sets is to drop variable sites with a minor allele frequency (MAF) below some specified threshold. Although widespread, this procedure has the potential to alter downstream population ge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::48d28e465354e83f94a208232eefbfda
https://doi.org/10.1111/1755-0998.12995
https://doi.org/10.1111/1755-0998.12995
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 11, Iss 1 (2021)
G3: Genes|Genomes|Genetics
G3: Genes|Genomes|Genetics
Dimensionality reduction is a common tool for visualization and inference of population structure from genotypes, but popular methods either return too many dimensions for easy plotting (PCA) or fail to preserve global geometry (t-SNE and UMAP). Here
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0d3bedea967e809f929cfaaa592b2bba
https://doi.org/10.1101/2020.08.12.248278
https://doi.org/10.1101/2020.08.12.248278
supplementary figures and tables for "Visualizing Population Structure with Variational Autoencoders"
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5078e5bfa176e39c690344f17e3f4860
Publikováno v:
eLife, Vol 9 (2020)
eLife
eLife
Most organisms are more closely related to nearby than distant members of their species, creating spatial autocorrelations in genetic data. This allows us to predict the location of origin of a genetic sample by comparing it to a set of samples of kn
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fb8149f35934a50bc5be66806ab11ad5
https://doi.org/10.1101/2019.12.11.872051
https://doi.org/10.1101/2019.12.11.872051
Autor:
Patricia A. Burrowes, Andrés García, Luisa M. Otero, C. J. Battey, Raymond B. Huey, Paul E. Hertz, George C. Gorman, Bradford C. Lister
1AbstractBecause Puerto Rico has warmed in recent decades, ectotherms there should have shifted their elevational ranges uphill. However, by comparing historical versus recent distributional records ofAnolislizards, we found that three “montane-for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f7a25eed3276e30615b194bdbab6b9d
https://doi.org/10.1101/751941
https://doi.org/10.1101/751941