Zobrazeno 1 - 10
of 1 328
pro vyhledávání: '"Burrows-wheeler transform"'
Publikováno v:
eLife, Vol 13 (2024)
Runs-of-homozygosity (ROH) segments, contiguous homozygous regions in a genome were traditionally linked to families and inbred populations. However, a growing literature suggests that ROHs are ubiquitous in outbred populations. Still, most existing
Externí odkaz:
https://doaj.org/article/7795cb95fd9d42c696b2ffb0a9038c55
Akademický článek
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Publikováno v:
Heliyon, Vol 9, Iss 6, Pp e17602- (2023)
Data stored on physical storage devices and transmitted over communication channels often have a lot of redundant information, which can be reduced through compression techniques to conserve space and reduce the time it takes to transmit the data. Th
Externí odkaz:
https://doaj.org/article/145abe574c2e44e4b7cb53eb2affcfd7
Publikováno v:
Journal of King Saud University: Computer and Information Sciences, Vol 34, Iss 7, Pp 4659-4668 (2022)
The continuous improvement of sequencing technologies has been paralleled by the development of efficient algorithms and data structures for sequencing data analysis and processing. Suffix array is one of data structures that are used to construct th
Externí odkaz:
https://doaj.org/article/5577105319204f16ba33e039e5b67e2b
Akademický článek
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Autor:
Jacques Demongeot, Joël Gardes, Christophe Maldivi, Denis Boisset, Kenza Boufama, Imène Touzouti
Publikováno v:
Computation, Vol 11, Iss 8, p 158 (2023)
Background: In present genomes, current relics of a circular RNA appear which could have played a central role as a primitive catalyst of the peptide genesis. Methods: Using a proximity measure to this circular RNA and the distance, a new unsupervise
Externí odkaz:
https://doaj.org/article/0b4dfe79c7a64b1a95081af26539ab5a
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 19, Iss , Pp 4067-4078 (2021)
Motivation: The de Bruijn graph has become a ubiquitous graph model for biological data ever since its initial introduction in the late 1990s. It has been used for a variety of purposes including genome assembly (Zerbino and Birney, 2008; Bankevich e
Externí odkaz:
https://doaj.org/article/d09103a281304b56a7b353dbcea9853d
Publikováno v:
Algorithms for Molecular Biology, Vol 15, Iss 1, Pp 1-5 (2020)
Abstract Background The construction of a suffix array for a collection of strings is a fundamental task in Bioinformatics and in many other applications that process strings. Related data structures, as the Longest Common Prefix array, the Burrows
Externí odkaz:
https://doaj.org/article/5cf5db694d514e1eab49f2be29d24638
Autor:
Dede Kadir, Ohlebusch Enno
Publikováno v:
Open Computer Science, Vol 10, Iss 1, Pp 82-96 (2020)
Marcus et al. (Bioinformatics 2014) proposed to use a compressed de Bruijn graph as a description of a pan-genome, comprising the genomes of many individuals/strains of the same or closely related species. Subsequent work improved the construction of
Externí odkaz:
https://doaj.org/article/0159213ca2d640b8ada2d0be7b299629
Publikováno v:
Algorithms for Molecular Biology, Vol 15, Iss 1, Pp 1-7 (2020)
Abstract Recent large-scale community sequencing efforts allow at an unprecedented level of detail the identification of genomic regions that show signatures of natural selection. Traditional methods for identifying such regions from individuals’ h
Externí odkaz:
https://doaj.org/article/0f0e5cf0df3c442d90170e0f5346acb9