PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.

Autor: Ghezzi H; Department of Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada., Fan YM; Department of Cellular and Physiological Sciences, University of British Columbia, Vancouver, British Columbia, Canada., Ng KM; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada., Burckhardt JC; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada., Pepin DM; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada., Lin X; Civil Engineering, The University of British Columbia, Vancouver, British Columbia, Canada., Ziels RM; Civil Engineering, The University of British Columbia, Vancouver, British Columbia, Canada., Tropini C; Department of Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada.; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada.; School of Biomedical Engineering, University of British Columbia, Vancouver, British Columbia, Canada.; Humans and the Microbiome Program, Canadian Institute for Advanced Research (CIFAR), Toronto, Ontario, Canada.

Publikováno v: MSphere [mSphere] 2024 Jul 30; Vol. 9 (7), pp. e0036024. Date of Electronic Publication: 2024 Jul 09.

Single-strain behavior predicts responses to environmental pH and osmolality in the gut microbiota.

Autor: Ng KM; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada.; School of Biomedical Engineering, University of British Columbia , Vancouver, Canada., Pannu S; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada., Liu S; School of Biomedical Engineering, University of British Columbia , Vancouver, Canada., Burckhardt JC; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada., Hughes T; Independent Researcher , Vancouver, British Columbia, Canada., Van Treuren W; Department of Microbiology and Immunology, Stanford University School of Medicine , Stanford, California, USA., Nguyen J; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada., Naqvi K; School of Biomedical Engineering, University of British Columbia , Vancouver, Canada., Nguyen B; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada., Clayton CA; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada., Pepin DM; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada., Collins SR; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada., Tropini C; Department of Microbiology and Immunology, University of British Columbia , Vancouver, Canada.; School of Biomedical Engineering, University of British Columbia , Vancouver, Canada.; Humans and the Microbiome Program, Canadian Institute for Advanced Research , Toronto, Canada.

Publikováno v: MBio [mBio] 2023 Aug 31; Vol. 14 (4), pp. e0075323. Date of Electronic Publication: 2023 Jul 11.

Hybridization decreases native cutthroat trout reproductive fitness.

Autor: Rosenthal WC; Department of Botany, University of Wyoming, Laramie, Wyoming, USA.; Program in Ecology and Evolution, University of Wyoming, Laramie, Wyoming, USA., Fennell JM; Department of Zoology and Physiology, University of Wyoming, Laramie, Wyoming, USA.; Wyoming Cooperative Fish and Wildlife Research Unit, University of Wyoming, Laramie, Wyoming, USA., Mandeville EG; Department of Botany, University of Wyoming, Laramie, Wyoming, USA.; Wyoming Cooperative Fish and Wildlife Research Unit, University of Wyoming, Laramie, Wyoming, USA.; Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada., Burckhardt JC; Wyoming Game and Fish Department, Cheyenne, Wyoming, USA., Walters AW; Program in Ecology and Evolution, University of Wyoming, Laramie, Wyoming, USA.; Department of Zoology and Physiology, University of Wyoming, Laramie, Wyoming, USA.; Wyoming Cooperative Fish and Wildlife Research Unit, University of Wyoming, Laramie, Wyoming, USA.; U.S. Geological Survey, Reston, Virginia, USA., Wagner CE; Department of Botany, University of Wyoming, Laramie, Wyoming, USA.; Program in Ecology and Evolution, University of Wyoming, Laramie, Wyoming, USA.; Biodiversity Institute, University of Wyoming, Laramie, Wyoming, USA.

Publikováno v: Molecular ecology [Mol Ecol] 2022 Aug; Vol. 31 (16), pp. 4224-4241. Date of Electronic Publication: 2022 Jul 13.