Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Burcak Otlu"'
Autor:
Maria Zhivagui, Areebah Hoda, Noelia Valenzuela, Yi-Yu Yeh, Jason Dai, Yudou He, Shuvro P. Nandi, Burcak Otlu, Bennett Van Houten, Ludmil B. Alexandrov
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Nail polish dryers commonly emit ultraviolet A (UVA) light, but the effects of this irradiation on mammalian cells remain unclear. Here, the authors examine the effects of UVA irradiation by a nail polish dryer on the genomes of mammalian cell lines,
Externí odkaz:
https://doaj.org/article/2c6c07a729a443be94d04a7debf38b91
Autor:
Maria Zhivagui, Areebah Hoda, Noelia Valenzuela, Yi-Yu Yeh, Jason Dai, Yudou He, Shuvro P. Nandi, Burcak Otlu, Bennett Van Houten, Ludmil B. Alexandrov
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-1 (2023)
Externí odkaz:
https://doaj.org/article/e7d53443ff974bf9958b92bb10480497
Autor:
Bin Zhu, Maria Luana Poeta, Manuela Costantini, Tongwu Zhang, Jianxin Shi, Steno Sentinelli, Wei Zhao, Vincenzo Pompeo, Maurizio Cardelli, Boian S. Alexandrov, Burcak Otlu, Xing Hua, Kristine Jones, Seth Brodie, Malgorzata Ewa Dabrowska, Jorge R. Toro, Meredith Yeager, Mingyi Wang, Belynda Hicks, Ludmil B. Alexandrov, Kevin M. Brown, David C. Wedge, Stephen Chanock, Vito Michele Fazio, Michele Gallucci, Maria Teresa Landi
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Many tumours are heterogenous, which calls into question whether multiple biopsies are required to accurately assess the cancer. Here, the authors show that papillary renal cell carcinoma is clonal in nature, suggesting that in this cancer one biopsy
Externí odkaz:
https://doaj.org/article/ffda5b58926c4a49be8ed66041ae4d4b
Autor:
Bin Zhu, Rachel Lokanga, Natalie Saini, Francisco Martínez-Jiménez, Jung Kim, Kevin M. Brown, Laura Mendoza, Kerstin Heselmeyer-Haddad, Andrea Castro, Mengying Li, Amy Hutchinson, Burcak Otlu, Aaron L Moye, Lucia Anna Muscarella, Nathan Cole, Michael Kebede, Neil E. Caporaso, Scott M. Lawrence, Paul Hofman, Dario Consonni, Manuela Costantini, Naser Ansari-Pour, Hannah Carter, Jonas S Almeida, Yohan Bossé, Maria Luana Poeta, Jian Sang, Bonnie E. Gould Rothberg, Mary E. Olanich, Maria Teresa Landi, Philippe Joubert, Jennifer Rosenbaum, Azhar Khandekar, Thomas Ried, Angela Cecilia Pesatori, Qing Lan, Carla F. Kim, Jiyeon Choi, Douglas R. Stewart, Samuel H. Wilson, Dmitry A. Gordenin, Abel Gonzalez-Perez, Tongwu Zhang, Petra Lenz, Montserrat Garcia-Closas, Nuria Lopez-Bigas, David C. Wedge, Daniela Hirsch, Praphulla M S Bhawsar, Matthew B. Schabath, Yves Pommier, Jianxin Shi, Nathaniel Rothman, Ludmil B. Alexandrov, Máire A. Duggan, S M Ashiqul Islam, Iliana Peneva, Stephen J. Chanock, Wei Zhao, Phuc H Hoang, Leszek J. Klimczak
Publikováno v:
Nat Genet
Lung cancer in never smokers (LCINS) is a common cause of cancer mortality but its genomic landscape is poorly characterized. Here high-coverage whole-genome sequencing of 232 LCINS showed 3 subtypes defined by copy number aberrations. The dominant s
Autor:
Maria Zhivagui, Areebah Hoda, Noelia Valenzuela, Yi-yu Yeh, Jason Dai, Yudou He, Shuvro P. Nandi, Burcak Otlu, Bennett Van Houten, Ludmil Alexandrov
Publikováno v:
Cancer Research. 83:LB059-LB059
Ultraviolet A (UVA) rays are long wavelengths that can penetrate the deeper layer of the skin and are responsible for the immediate tanning effect. A multitude of natural and artificial sources of UV exposure exist, including UV-emitting lamps that a
Autor:
Burcak Otlu, Marcos Díaz-Gay, Ian Vermes, Erik N Bergstrom, Maria Zhivagui, Mark Barnes, Ludmil B. Alexandrov
SUMMARYThe somatic mutations found in a cancer genome are imprinted by different mutational processes. Each process exhibits a characteristic mutational signature, which can be affected by the genome architecture. However, the interplay between mutat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2617d6724e15f8b1f0b4687ff943f560
https://doi.org/10.1101/2022.05.29.493921
https://doi.org/10.1101/2022.05.29.493921
Autor:
Maria Zhivagui, Areebah Hoda, Noelia Valenzuela, Yi-Yu Yeh, Jason Dai, Yudou He, Shuvro P. Nandi, Burcak Otlu, Bennett Van Houten, Ludmil B. Alexandrov
Publikováno v:
Nature communications, vol 14, iss 1
Ultraviolet A light (UVA) is commonly emitted by nail polish dryers with recent reports suggesting that long-term use of UV-nail polish dryers may increase the risk for developing skin cancer. However, no experimental evaluation has been conducted to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24756ed0dc4d7fe9b560d2fdf94a499f
https://doi.org/10.1101/2021.02.03.429605
https://doi.org/10.1101/2021.02.03.429605
Autor:
David C. Wedge, Michael R. Stratton, Kevin J. Dawson, Sebastian Grossmann, Peter J. Campbell, Jonathan S. Brammeld, Ilias Georgakopoulos-Soares, Young Seok Ju, Sarah O’Meara, Keiran Raine, Calli Latimer, Francesco Iorio, Bee Ling Ng, Burcak Otlu, Kathryn Beal, Jorge Zamora, Adam Butler, Shriram G. Bhosle, Bernardo Rodriguez-Martin, Jennifer Graham, Jon W. Teague, Mark Maddison, Elizabeth Anderson, Nikita Patel, Ludmil B. Alexandrov, Ultan McDermott, Mathew J. Garnett, David Jones, Ching Chiek Koh, Andrew Menzies, Stacey Price, Laura O’Neill, Serena Nik-Zainal, Mia Petljak, Jose M. C. Tubio
Publikováno v:
Cell
Petljak, M, Alexandrov, L B, Brammeld, J S, Price, S, Wedge, D C, Grossmann, S, Dawson, K J, Ju, Y S, Iorio, F, Tubio, J M C, Koh, C C, Georgakopoulos-Soares, I, Rodríguez-Martín, B, Otlu, B, O'Meara, S, Butler, A P, Menzies, A, Bhosle, S G, Raine, K, Jones, D R, Teague, J W, Beal, K, Latimer, C, O'Neill, L, Zamora, J, Anderson, E, Patel, N, Maddison, M, Ng, B L, Graham, J, Garnett, M J, McDermott, U, Nik-Zainal, S, Campbell, P J & Stratton, M R 2019, ' Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis ', Cell . https://doi.org/10.1016/j.cell.2019.02.012
Minerva. Repositorio Institucional de la Universidad de Santiago de Compostela
instname
Petljak, M, Alexandrov, L B, Brammeld, J S, Price, S, Wedge, D C, Grossmann, S, Dawson, K J, Ju, Y S, Iorio, F, Tubio, J M C, Koh, C C, Georgakopoulos-Soares, I, Rodríguez-Martín, B, Otlu, B, O'Meara, S, Butler, A P, Menzies, A, Bhosle, S G, Raine, K, Jones, D R, Teague, J W, Beal, K, Latimer, C, O'Neill, L, Zamora, J, Anderson, E, Patel, N, Maddison, M, Ng, B L, Graham, J, Garnett, M J, McDermott, U, Nik-Zainal, S, Campbell, P J & Stratton, M R 2019, ' Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis ', Cell . https://doi.org/10.1016/j.cell.2019.02.012
Minerva. Repositorio Institucional de la Universidad de Santiago de Compostela
instname
Summary Multiple signatures of somatic mutations have been identified in cancer genomes. Exome sequences of 1,001 human cancer cell lines and 577 xenografts revealed most common mutational signatures, indicating past activity of the underlying proces
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ef46c3ac8f2812db476d77816fba4765
https://www.repository.cam.ac.uk/handle/1810/291718
https://www.repository.cam.ac.uk/handle/1810/291718
Autor:
Bin Zhu, Maria Luana Poeta, Manuela Costantini, Tongwu Zhang, Jianxin Shi, Steno Sentinelli, Wei Zhao, Vincenzo Pompeo, Maurizio Cardelli, Boian S. Alexandrov, Burcak Otlu, Xing Hua, Kristine Jones, Seth Brodie, Jorge R. Toro, Meredith Yeager, Mingyi Wang, Belynda Hicks, Ludmil B. Alexandrov, Kevin M. Brown, David C. Wedge, Stephen Chanock, Vito Michele Fazio, Michele Gallucci, Maria Teresa Landi
Intratumor heterogeneity (ITH) and tumor evolution have been described for clear cell renal cell carcinomas (ccRCC), but only limited data are available for other kidney cancer subtypes. Moreover, previous ITH studies predominately focused on single
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eb8f3034d1ba21ee55aa056bfa09bcd7
https://doi.org/10.1101/478156
https://doi.org/10.1101/478156