Comprehensive multi-center assessment of accuracy, reproducibility and bias of small RNA-seq methods for quantitative miRNA profiling

Autor: Giraldez, MD, Spengler, RM, Etheridge, A, Godoy, PM, Barczak, AJ, Srinivasan, S, De Hoff, PL, Tanriverdi, K, Courtright, A, Lu, S, Khoory, J, Rubio, R, Baxter, D, Driedonks, TAP, Buermans, HPJ, Nolte-‘t Hoen, ENM, Jiang, H, Wang, K, Ghiran, I, Wang, Y, Van Keuren-Jensen, K, Freedman, JE, Woodruff, PG, Laurent, LC, Erle, DJ, Galas, DJ, Tewari, M

Publikováno v: Nature biotechnology

RNA-seq is increasingly employed for quantitative profiling of small RNAs (e.g., microRNAs, piRNAs, snoRNAs) in diverse sample types including isolated cells, tissues and cell-free biofluids. The accuracy and reproducibility of the multiple small RNA

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::aa5a1b56db4eeaa307f3ecd80e1c9e69
http://europepmc.org/articles/PMC6078798

Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.

Immune stimuli shape the small non-coding transcriptome of extracellular vesicles released by dendritic cells.

Autor: Driedonks TAP; Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands., van der Grein SG; Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands., Ariyurek Y; Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.; Leiden Genome Technology Center, Leiden University Medical Center, Leiden, The Netherlands., Buermans HPJ; Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.; Leiden Genome Technology Center, Leiden University Medical Center, Leiden, The Netherlands., Jekel H; Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands., Chow FWN; School of Biological Sciences, Centre for Immunity, Infection and Evolution, Institute of Immunology and Infection Research, University of Edinburgh, Edinburgh, UK., Wauben MHM; Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands., Buck AH; School of Biological Sciences, Centre for Immunity, Infection and Evolution, Institute of Immunology and Infection Research, University of Edinburgh, Edinburgh, UK., 't Hoen PAC; Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.; Centre for Biomolecular and Molecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center Nijmegen, Nijmegen, The Netherlands., Nolte-'t Hoen ENM; Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands. e.n.m.nolte@uu.nl.

Publikováno v: Cellular and molecular life sciences : CMLS [Cell Mol Life Sci] 2018 Oct; Vol. 75 (20), pp. 3857-3875. Date of Electronic Publication: 2018 May 28.

Comprehensive multi-center assessment of small RNA-seq methods for quantitative miRNA profiling.

Autor: Giraldez MD; Department of Internal Medicine, Hematology/Oncology Division, University of Michigan, Ann Arbor, Michigan, USA., Spengler RM; Department of Internal Medicine, Hematology/Oncology Division, University of Michigan, Ann Arbor, Michigan, USA., Etheridge A; Pacific Northwest Research Institute, Seattle, Washington, USA., Godoy PM; Lung Biology Center, Department of Medicine, University of California San Francisco, San Francisco, California, USA., Barczak AJ; Lung Biology Center, Department of Medicine, University of California San Francisco, San Francisco, California, USA., Srinivasan S; Department of Obstetrics, Gynecology, and Reproductive Sciences and Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, California, USA., De Hoff PL; Department of Obstetrics, Gynecology, and Reproductive Sciences and Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, California, USA., Tanriverdi K; Department of Medicine, Division of Cardiovascular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA., Courtright A; Neurogenomics, The Translational Genomics Research Institute (TGen), Phoenix, Arizona, USA., Lu S; Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA., Khoory J; Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA., Rubio R; Center for Cancer Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA., Baxter D; Institute for Systems Biology, Seattle, Washington, USA., Driedonks TAP; Department of Biochemistry & Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands., Buermans HPJ; Leiden Genome Technology Center, Department of Human Genetics, Leiden University Medical Center, Leiden, the Netherlands., Nolte-'t Hoen ENM; Department of Biochemistry & Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands., Jiang H; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.; Department of Biostatistics, University of Michigan, Ann Arbor, Michigan, USA., Wang K; Institute for Systems Biology, Seattle, Washington, USA., Ghiran I; Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, USA., Wang YE; Center for Cancer Computational Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA., Van Keuren-Jensen K; Neurogenomics, The Translational Genomics Research Institute (TGen), Phoenix, Arizona, USA., Freedman JE; Department of Medicine, Division of Cardiovascular Medicine, University of Massachusetts Medical School, Worcester, Massachusetts, USA., Woodruff PG; Cardiovascular Research Institute and the Department of Medicine, Division of Pulmonary, Critical Care, Sleep, and Allergy, University of California San Francisco, San Francisco, California, USA., Laurent LC; Department of Obstetrics, Gynecology, and Reproductive Sciences and Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, California, USA., Erle DJ; Lung Biology Center, Department of Medicine, University of California San Francisco, San Francisco, California, USA., Galas DJ; Pacific Northwest Research Institute, Seattle, Washington, USA., Tewari M; Department of Internal Medicine, Hematology/Oncology Division, University of Michigan, Ann Arbor, Michigan, USA.; Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, USA.; Department of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan, USA.; Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan, USA.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2018 Sep; Vol. 36 (8), pp. 746-757. Date of Electronic Publication: 2018 Jul 16.

Brain Transcriptomic Analysis of Hereditary Cerebral Hemorrhage With Amyloidosis-Dutch Type.

Autor: Grand Moursel L; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.; Department of Radiology, Leiden University Medical Center, Leiden, Netherlands., van Roon-Mom WMC; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands., Kiełbasa SM; Department of Medical Statistics and Bioinformatics, Leiden University Medical Center, Leiden, Netherlands., Mei H; Department of Medical Statistics and Bioinformatics, Leiden University Medical Center, Leiden, Netherlands., Buermans HPJ; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands., van der Graaf LM; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.; Department of Radiology, Leiden University Medical Center, Leiden, Netherlands., Hettne KM; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands., de Meijer EJ; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands., van Duinen SG; Department of Pathology, Leiden University Medical Center, Leiden, Netherlands., Laros JFJ; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.; Department of Clinical Genetics, Leiden University Medical Center, Leiden, Netherlands., van Buchem MA; Department of Radiology, Leiden University Medical Center, Leiden, Netherlands., 't Hoen PAC; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands., van der Maarel SM; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands., van der Weerd L; Department of Human Genetics, Leiden University Medical Center, Leiden, Netherlands.; Department of Radiology, Leiden University Medical Center, Leiden, Netherlands.

Publikováno v: Frontiers in aging neuroscience [Front Aging Neurosci] 2018 Apr 13; Vol. 10, pp. 102. Date of Electronic Publication: 2018 Apr 13 (Print Publication: 2018).