A wall-time minimizing parallelization strategy for approximate Bayesian computation.

Autor: Alamoudi E; Life and Medical Sciences Institute, University of Bonn, Bonn, Germany., Reck F; Life and Medical Sciences Institute, University of Bonn, Bonn, Germany., Bundgaard N; BioQuant-Center for Quantitative Biology, Heidelberg University, Heidelberg, Germany., Graw F; BioQuant-Center for Quantitative Biology, Heidelberg University, Heidelberg, Germany.; Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany.; Department of Medicine 5, Friedrich-Alexander-University Erlangen-Nürnberg, Erlangen, Germany., Brusch L; Center of Information Services and High Performance Computing (ZIH), Technische Universität Dresden, Dresden, Germany., Hasenauer J; Life and Medical Sciences Institute, University of Bonn, Bonn, Germany.; Helmholtz Zentrum München, Institute of Computational Biology, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany., Schälte Y; Life and Medical Sciences Institute, University of Bonn, Bonn, Germany.; Helmholtz Zentrum München, Institute of Computational Biology, Neuherberg, Germany.; Center for Mathematics, Technische Universität München, Garching, Germany.

Publikováno v: PloS one [PLoS One] 2024 Feb 22; Vol. 19 (2), pp. e0294015. Date of Electronic Publication: 2024 Feb 22 (Print Publication: 2024).

A latent cardiomyocyte regeneration potential in human heart disease.

Autor: Derks W; Center for Regenerative Therapies Dresden, TU Dresden, Dresden, Germany., Rode J; Center of Information Services and High-Performance Computing, TU Dresden, Dresden, Germany., Collin S; Department of Cell and Molecular Biology, Karolinska Institute, SE-171 77 Stockholm, Sweden., Rost F; Center for Regenerative Therapies Dresden, TU Dresden, Dresden, Germany.; Center of Information Services and High-Performance Computing, TU Dresden, Dresden, Germany.; DRESDEN-concept Genome Center, Technology Platform at the Center for Molecular and Cellular Bioengineering (CMCB), Technische Universität Dresden, Dresden, Germany., Heinke P; Center for Regenerative Therapies Dresden, TU Dresden, Dresden, Germany., Hariharan A; Center for Regenerative Therapies Dresden, TU Dresden, Dresden, Germany., Pickel L; Center for Regenerative Therapies Dresden, TU Dresden, Dresden, Germany., Simonova I; Center for Regenerative Therapies Dresden, TU Dresden, Dresden, Germany., Lázár E; Department of Cell and Molecular Biology, Karolinska Institute, SE-171 77 Stockholm, Sweden., Graham E; Department of Cell and Molecular Biology, Karolinska Institute, SE-171 77 Stockholm, Sweden., Jashari R; European Homograft Bank, B-1120 Brussels, Belgium., Andrä M; Department of Cardiothoracic and Vascular Surgery, Klinikum Klagenfurt and Section for Surgical Research Medical University Graz, 9020 Graz, Austria., Jeppsson A; Department of Cardiothoracic Surgery, Sahlgrenska University Hospital, SE-413 45 Gothenburg, Sweden.; Department of Molecular and Clinical Medicine, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden., Salehpour M; Department of Physics and Astronomy, Applied Nuclear Physics, Uppsala University, SE-751 20 Uppsala, Sweden., Alkass K; Department of Oncology-Pathology, Karolinska Institute, SE-171 77 Stockholm and National Board of Forensic Medicine, SE-171 65 Stockholm, Sweden., Druid H; Department of Oncology-Pathology, Karolinska Institute, SE-171 77 Stockholm and National Board of Forensic Medicine, SE-171 65 Stockholm, Sweden., Kyriakopoulos CP; Divisions of Cardiovascular Medicine and Cardiothoracic Surgery, University of Utah Health & School of Medicine, Salt Lake City, Utah, United States.; Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, Utah, United States., Taleb I; Divisions of Cardiovascular Medicine and Cardiothoracic Surgery, University of Utah Health & School of Medicine, Salt Lake City, Utah, United States.; Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, Utah, United States., Shankar TS; Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, Utah, United States., Selzman CH; Divisions of Cardiovascular Medicine and Cardiothoracic Surgery, University of Utah Health & School of Medicine, Salt Lake City, Utah, United States.; Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, Utah, United States., Sadek H; Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.; Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA., Jovinge S; Spectrum Health Frederik Meijer Heart & Vascular Institute and Van Andel Institute, Grand Rapids, MI 49503, USA., Brusch L; Center of Information Services and High-Performance Computing, TU Dresden, Dresden, Germany., Frisén J; Department of Cell and Molecular Biology, Karolinska Institute, SE-171 77 Stockholm, Sweden., Drakos S; Divisions of Cardiovascular Medicine and Cardiothoracic Surgery, University of Utah Health & School of Medicine, Salt Lake City, Utah, United States.; Nora Eccles Harrison Cardiovascular Research and Training Institute, University of Utah, Salt Lake City, Utah, United States., Bergmann O; Center for Regenerative Therapies Dresden, TU Dresden, Dresden, Germany.; Department of Cell and Molecular Biology, Karolinska Institute, SE-171 77 Stockholm, Sweden.; Pharmacology and Toxicology, Department of Pharmacology and Toxicology University Medical Center Goettingen, Goettingen, Germany.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Sep 17. Date of Electronic Publication: 2023 Sep 17.

Massively Parallel Likelihood-Free Parameter Inference for Biological Multi-Scale Systems

Autor: Alamoudi, E., Starruß, J., Bundgaard, N., Müller, R., Reck, F., Graw, F., Brusch, L., Hasenauer, J., Schälte, Y.

Publikováno v: Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Publication Series of the John von Neumann Institute for Computing (NIC) NIC Series 51, 355-365 (2022).
NIC Symposium 2022: proceedings
NIC Symposium 2022: proceedingsNIC Symposium 2022, Jülich, Germany, 2022-09-29-2022-09-30

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3364::56d6435da3b3cf5ecd567b646811d82a
https://hdl.handle.net/2128/33523

BioSimulators: a central registry of simulation engines and services for recommending specific tools.

Autor: Shaikh B; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Smith LP; University of Washington, Seattle, WA 98105, USA., Vasilescu D; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Marupilla G; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Wilson M; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Agmon E; Stanford University, Stanford, CA 94305, USA., Agnew H; LibreTexts, USA., Andrews SS; University of Washington, Seattle, WA 98105, USA., Anwar A; New York University, Brooklyn, NY 11201, USA., Beber ME; Unseen Bio ApS, 2100 København Ø, Denmark., Bergmann FT; Heidelberg University, 69120 Heidelberg, Germany., Brooks D; University of Auckland, 1010 Auckland, New Zealand., Brusch L; Technical University of Dresden, 01187 Dresden, Germany., Calzone L; Institut Curie, 75248 Paris, France., Choi K; Korea Institute for Advanced Study, 02455 Seoul, South Korea., Cooper J; University of North Carolina, Asheville, Ashville, NC 28804, USA., Detloff J; Independent, Madison, WI 53705, USA., Drawert B; University of North Carolina, Asheville, Ashville, NC 28804, USA., Dumontier M; Maastricht University, 6200 Maastricht, Netherlands., Ermentrout GB; University of Pittsburgh, Pittsburgh, PA 15260, USA., Faeder JR; University of Pittsburgh, Pittsburgh, PA 15260, USA., Freiburger AP; University of Victoria, Victoria, BC V8P 5C2, Canada., Fröhlich F; Harvard Medical School, Boston, MA 02115, USA., Funahashi A; Keio University, Yokohama 223-8522, Japan., Garny A; University of Auckland, 1010 Auckland, New Zealand., Gennari JH; University of Washington, Seattle WA 98019, USA., Gleeson P; University College London, London WC1E 6BT, UK., Goelzer A; Université Paris-Saclay, INRAE, MaIAGE, 78350 Jouy-en-Josas, France., Haiman Z; University of California, San Diego, La Jolla, CA 92093, USA., Hasenauer J; Universität Bonn, 53115 Bonn, Germany., Hellerstein JL; University of Washington, Seattle, WA 98105, USA., Hermjakob H; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Hoops S; University of Virginia, Charlottesville, VA 22904, USA., Ison JC; CNRS, UMS 3601, Institut Français de Bioinformatique, IFB-core, 91000 Évry-Courcouronnes, France., Jahn D; Technical University of Dresden, 01187 Dresden, Germany., Jakubowski HV; College of Saint Benedict and Saint John's University, St. Joseph, MN 56374, USA., Jordan R; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Kalaš M; University of Bergen, 5020 Bergen, Norway., König M; Humboldt University of Berlin, 10115 Berlin, Germany., Liebermeister W; Université Paris-Saclay, INRAE, MaIAGE, 78350 Jouy-en-Josas, France., Sheriff RSM; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Mandal S; Technical University of Dresden, 01069 Dresden, Germany., McDougal R; Yale University, New Haven, CT 06511, USA., Medley JK; Autodesk, Inc., San Rafael, CA 94903, USA., Mendes P; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Müller R; Technical University of Dresden, 01187 Dresden, Germany., Myers CJ; University of Colorado at Boulder, Boulder CO, 80309, USA., Naldi A; Inria Saclay - Île-de-France Research Centre, 91120 Palaiseau, France., Nguyen TVN; European Molecular Biology Laboratory - European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK., Nickerson DP; University of Auckland, 1010 Auckland, New Zealand., Olivier BG; Vrije Universiteit Amsterdam, 1081 HZ Amsterdam, Netherlands., Patoliya D; Sarvajanik College of Engineering & Technology, Surat, Gujarat 395001, India., Paulevé L; Centre National de la Recherche Scientifique, 33400 Talence, France., Petzold LR; University of California, Santa Barbara, Santa Barbara, CA 93106, USA., Priya A; Birla Institute of Technology, Mesra, Jharkhand 835215, India., Rampadarath AK; University of Auckland, 1010 Auckland, New Zealand., Rohwer JM; Stellenbosch University, Stellenbosch, 7600, South Africa., Saglam AS; University of Pittsburgh, Pittsburgh, PA 15260, USA., Singh D; Subconscious Compute Pvt. Ltd., Bangalore, India., Sinha A; University College London, London, WC1E 6BT, UK., Snoep J; Stellenbosch University, Stellenbosch, 7600, South Africa., Sorby H; University of Auckland, 1010 Auckland, New Zealand., Spangler R; Allen Institute for Cell Science, Seattle, WA 98109, USA., Starruß J; Technical University of Dresden, 01187 Dresden, Germany., Thomas PJ; University of Utah, Salt Lake City, UT 84112, USA., van Niekerk D; Stellenbosch University, Stellenbosch, 7600, South Africa., Weindl D; Helmholtz Zentrum München GmbH and German Research Center for Environmental Health, 85764 Neuherberg, Germany., Zhang F; National Institutes of Health, Bethesda, MD 20892, USA., Zhukova A; Institut Pasteur, 75015 Paris, France., Goldberg AP; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA., Schaff JC; University of Connecticut School of Medicine, Farmington, CT 06030, USA.; Applied BioMath LLC, Concord, MA 01742, USA., Blinov ML; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Sauro HM; University of Washington, Seattle, WA 98105, USA., Moraru II; University of Connecticut School of Medicine, Farmington, CT 06030, USA., Karr JR; Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2022 Jul 05; Vol. 50 (W1), pp. W108-W114.

Diploid hepatocytes drive physiological liver renewal in adult humans.

Autor: Heinke P; Center for Regenerative Therapies, Technische Universität Dresden, 01307 Dresden, Germany., Rost F; Center for Regenerative Therapies, Technische Universität Dresden, 01307 Dresden, Germany; Max Planck Institute for the Physics of Complex Systems, 01187 Dresden, Germany; Centre for Information Services and High Performance Computing, Technische Universität Dresden, 01187 Dresden, Germany., Rode J; Centre for Information Services and High Performance Computing, Technische Universität Dresden, 01187 Dresden, Germany., Trus P; Center for Regenerative Therapies, Technische Universität Dresden, 01307 Dresden, Germany., Simonova I; Center for Regenerative Therapies, Technische Universität Dresden, 01307 Dresden, Germany., Lázár E; Department of Cell and Molecular Biology, Karolinska Institutet, 17177 Stockholm, Sweden., Feddema J; Center for Regenerative Therapies, Technische Universität Dresden, 01307 Dresden, Germany., Welsch T; Visceral-, Thoracic- and Vascular Surgery, University Hospital Carl Gustav Carus, Technische Universität Dresden, 01307 Dresden, Germany., Alkass K; Department of Oncology-Pathology, Karolinska Institutet, 17177 Stockholm, Sweden., Salehpour M; Department of Physics and Astronomy, Applied Nuclear Physics, Ion Physics, Uppsala University, 75120 Uppsala, Sweden., Zimmermann A; Department of Hepatobiliary Surgery and Visceral Transplantation, University of Leipzig, 04103 Leipzig, Germany; Saxonian Incubator for Clinical Translation (SIKT), Leipzig University, 04103 Leipzig, Germany., Seehofer D; Department of Hepatobiliary Surgery and Visceral Transplantation, University of Leipzig, 04103 Leipzig, Germany; Saxonian Incubator for Clinical Translation (SIKT), Leipzig University, 04103 Leipzig, Germany., Possnert G; Department of Physics and Astronomy, Applied Nuclear Physics, Ion Physics, Uppsala University, 75120 Uppsala, Sweden., Damm G; Department of Hepatobiliary Surgery and Visceral Transplantation, University of Leipzig, 04103 Leipzig, Germany; Saxonian Incubator for Clinical Translation (SIKT), Leipzig University, 04103 Leipzig, Germany., Druid H; Department of Oncology-Pathology, Karolinska Institutet, 17177 Stockholm, Sweden., Brusch L; Centre for Information Services and High Performance Computing, Technische Universität Dresden, 01187 Dresden, Germany., Bergmann O; Center for Regenerative Therapies, Technische Universität Dresden, 01307 Dresden, Germany; Department of Cell and Molecular Biology, Karolinska Institutet, 17177 Stockholm, Sweden. Electronic address: olaf_bergmann@tu-dresden.de.

Publikováno v: Cell systems [Cell Syst] 2022 Jun 15; Vol. 13 (6), pp. 499-507.e12. Date of Electronic Publication: 2022 May 31.