Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols

Autor: Samuel P. Forry, Stephanie L. Servetas, Jason G. Kralj, Keng Soh, Michalis Hadjithomas, Raul Cano, Martha Carlin, Maria G. de Amorim, Benjamin Auch, Matthew G. Bakker, Thais F. Bartelli, Juan P. Bustamante, Ignacio Cassol, Mauricio Chalita, Emmanuel Dias-Neto, Aaron Del Duca, Daryl M. Gohl, Jekaterina Kazantseva, Muyideen T. Haruna, Peter Menzel, Bruno S. Moda, Lorieza Neuberger-Castillo, Diana N. Nunes, Isha R. Patel, Rodrigo D. Peralta, Adrien Saliou, Rolf Schwarzer, Samantha Sevilla, Isabella K. T. M. Takenaka, Jeremy R. Wang, Rob Knight, Dirk Gevers, Scott A. Jackson

Publikováno v: Scientific Reports, Vol 14, Iss 1, Pp 1-14 (2024)

Abstract Several studies have documented the significant impact of methodological choices in microbiome analyses. The myriad of methodological options available complicate the replication of results and generally limit the comparability of findings b

Externí odkaz: https://doaj.org/article/9326cd72a787444696c754805552b79a

Genomics and epidemiology for gastric adenocarcinomas (GE4GAC): a Brazilian initiative to study gastric cancer

Autor: Rommel Mario Rodriguez Burbano, Diana N. Nunes, Daniela Medeiros Milhomem Cardoso, Israel Tojal da Silva, Maria João Amorim, Thais Fernanda Bartelli, Jaqueline C. Pontes, Francisco I. A. Alves, Karina Miranda Santiago, Sara V. Sampaio, Gabriela E. Albuquerque, Milena Camardelli Cordeiro, Celso Abdon Lopes de Mello, Kenneth J. Gollob, Alexandre Defelicibus, Lilian Carla Carneiro, Eran Elhaik, Hanna B. Andrade, Vilma R. Martins, Camila M. Gatti, Rosane O. Sant’Ana, Bianca C. T. Flores, Adriane G. Pelosof, Renan Valieris, Laura C. L. Claro, David R. F. Carter, Mônica Santiago Barbosa, Wilson L. Costa-Jr, Tiago Medina, Victor Hugo Fonseca de Jesus, Marcela de Araújo Fagundes, Ana C. C. Pereira, Ludmilla Thomé Domingos Chinen, Felipe José Fernandez Coimbra, Alexandre M. Brito, Vinicius Fernando Calsavara, Rodrigo Duarte Drummond, Claudia Sztokfisz, Paulo Pimentel Assumpção, André Salim Khayat, Vilma Sousa Santana, Luiza Ferreira de Araújo, Irina Bobrovnitchaia, Deborah T. Souza, Gabriela P. Branco, Luiz Gonzaga Vaz Coelho, Ana Karyssa Mendes Anaissi, Calebe R. Nóbrega, Paola E. Arantes, Lucas O. Monção, Rachel Riechelmann, Marília de Souza Araújo, Maria P. Curado, Dirce Maria Carraro, Lucas Luiz de Lima Silva, Giovana Tardin Torrezan, Amanda Ferreira Paes Landim Ramos, Helano C. Freitas, Lais Lie Senda de Abrantes, Rodrigo Borges, Tayana Vago de Miranda, Bruno S. Moda, Graziela P. P. Baladão, Carlos C. Altamirano, Marianna S. Serpa, Jordana M. Silva, João C. Setubal, Tatiane Tiengo, Samia Demachki, Monize Nakamoto Provisor Santos, Isabella Kuniko T. Takenaka, Emmanuel Dias-Neto, Stela V. Peres, Alexcia Camila Braun, Andrew Maltez Thomas, Emne Ali Abdallah

Publikováno v: Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Applied Cancer Research, Vol 39, Iss 1, Pp 1-4 (2019)

Gastric cancer (GC) is the fifth most common type of cancer worldwide with high incidences in Asia, Central, and South American countries. This patchy distribution means that GC studies are neglected by large research centers from developed countries

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4be25118708528c4cb94ace8b471d34b
https://doi.org/10.1186/s41241-019-0081-4

Partial suppression of the respiratory defect of qrs1/her2 glutamyl-tRNA amidotransferase mutants by overexpression of the mitochondrial pentatricopeptide Msc6p

Autor: Mario H. Barros, Bruno S. Moda, Jose Ribamar Ferreira-Junior

Publikováno v: Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP

Recently, a large body of evidences indicates the existence in the mitochondrial matrix of foci that contain different proteins involved in mitochondrial RNA metabolism. Some of these proteins have a pentatricopeptide repeat motif that constitutes th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9e0af3ab7546fd35d97f0981c084aa8b
https://doi.org/10.1007/s00294-016-0566-6

Msc6p is required for mitochondrial translation initiation in the absence of formylated Met-tRNA

Autor: Bruno S. Moda, Maria Albertina M. Soares, Mario H. Barros, Leticia Veloso Ribeiro Franco

Publikováno v: The FEBS journal. 286(7)

Mitochondrial translation normally requires formylation of the initiator tRNA-met, a reaction catalyzed by the enzyme formyltransferase, Fmt1p and MTFMT in Saccharomyces cerevisiae and human mitochondria, respectively. Yeast fmt1 mutants devoid of Fm

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1bebdcbaa8c85d02399ab24de1b9bdc
https://pubmed.ncbi.nlm.nih.gov/30767393