Zobrazeno 1 - 10
of 43
pro vyhledávání: '"Bruce J. Walker"'
Autor:
Rauf Salamzade, Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma, Lorrie L. He, Terrance P. Shea, James Qu, Sinéad B. Chapman, Whitney Howe, Sarah K. Young, Jenna I. Wurster, Mary L. Delaney, Sanjat Kanjilal, Andrew B. Onderdonk, Cassiana E. Bittencourt, Gabrielle M. Gussin, Diane Kim, Ellena M. Peterson, Mary Jane Ferraro, David C. Hooper, Erica S. Shenoy, Christina A. Cuomo, Lisa A. Cosimi, Susan S. Huang, James E. Kirby, Virginia M. Pierce, Roby P. Bhattacharyya, Ashlee M. Earl
Publikováno v:
Genome Medicine, Vol 14, Iss 1, Pp 1-22 (2022)
Abstract Background Carbapenem-resistant Enterobacterales (CRE) are an urgent global health threat. Inferring the dynamics of local CRE dissemination is currently limited by our inability to confidently trace the spread of resistance determinants to
Externí odkaz:
https://doaj.org/article/57dc460746d040e3850323d8b6411193
StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities
Autor:
Lucas R. van Dijk, Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber, Christine Anyansi, Amy J. Pickering, Scott J. Hultgren, Abigail L. Manson, Thomas Abeel, Ashlee M. Earl
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-27 (2022)
Abstract Human-associated microbial communities comprise not only complex mixtures of bacterial species, but also mixtures of conspecific strains, the implications of which are mostly unknown since strain level dynamics are underexplored due to the d
Externí odkaz:
https://doaj.org/article/ebea40720d8445e09bfcaeec17a670df
Autor:
Timothy J. Straub, Wen-Chi Chou, Abigail L. Manson, Henry L. Schreiber, Bruce J. Walker, Christopher A. Desjardins, Sinéad B. Chapman, Kerrie L. Kaspar, Orsalem J. Kahsai, Elizabeth Traylor, Karen W. Dodson, Meredith A. J. Hullar, Scott J. Hultgren, Christina Khoo, Ashlee M. Earl
Publikováno v:
BMC Microbiology, Vol 21, Iss 1, Pp 1-17 (2021)
Abstract Background Urinary tract infections (UTIs) affect 15 million women each year in the United States, with > 20% experiencing frequent recurrent UTIs. A recent placebo-controlled clinical trial found a 39% reduction in UTI symptoms among recurr
Externí odkaz:
https://doaj.org/article/5c7c3468a1dc4d208ef6d1c73577946d
Autor:
Christine Anyansi, Arlin Keo, Bruce J. Walker, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl, Thomas Abeel
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-16 (2020)
Abstract Background Mixed infections of Mycobacterium tuberculosis and antibiotic heteroresistance continue to complicate tuberculosis (TB) diagnosis and treatment. Detection of mixed infections has been limited to molecular genotyping techniques, wh
Externí odkaz:
https://doaj.org/article/9d60d92478e145f19b9181138a009445
Autor:
Colin J. Worby, Henry L. Schreiber, Timothy J. Straub, Lucas R. van Dijk, Ryan A. Bronson, Benjamin S. Olson, Jerome S. Pinkner, Chloe L. P. Obernuefemann, Vanessa L. Muñoz, Alexandra E. Paharik, Philippe N. Azimzadeh, Bruce J. Walker, Christopher A. Desjardins, Wen-Chi Chou, Karla Bergeron, Sinéad B. Chapman, Aleksandra Klim, Abigail L. Manson, Thomas J. Hannan, Thomas M. Hooton, Andrew L. Kau, H. Henry Lai, Karen W. Dodson, Scott J. Hultgren, Ashlee M. Earl
Publikováno v:
Nature Microbiology. 7:630-639
Recurrent urinary tract infections (rUTIs) are a major health burden worldwide, with history of infection being a significant risk factor. While the gut is a known reservoir for uropathogenic bacteria, the role of the microbiota in rUTI remains uncle
Autor:
Sosie Yorki, Terrance Shea, Christina A Cuomo, Bruce J Walker, Regina C LaRocque, Abigail L Manson, Ashlee M Earl, Colin J Worby
Publikováno v:
Briefings in Bioinformatics. 24
Recent technological and computational advances have made metagenomic assembly a viable approach to achieving high-resolution views of complex microbial communities. In previous benchmarking, short-read (SR) metagenomic assemblers had the highest acc
Autor:
Rauf Salamzade, Abigail L. Manson, Bruce J. Walker, Thea Brennan-Krohn, Colin J. Worby, Peijun Ma, Lorrie L. He, Terrance P. Shea, James Qu, Sinéad B. Chapman, Whitney Howe, Sarah K. Young, Jenna I. Wurster, Mary L. Delaney, Sanjat Kanjilal, Andrew B. Onderdonk, Alejandro Pironti, Cassiana E. Bittencourt, Gabrielle M. Gussin, Diane Kim, Ellena M. Peterson, Mary Jane Ferraro, David C. Hooper, Erica S. Shenoy, Christina A. Cuomo, Deborah T. Hung, Lisa A. Cosimi, Susan S. Huang, James E. Kirby, Virginia M. Pierce, Roby P. Bhattacharyya, Ashlee M. Earl
BackgroundCarbapenem-resistant Enterobacterales (CRE) are an urgent global health threat. Inferring the dynamics of local CRE dissemination is currently limited by our inability to confidently trace the spread of resistance determinants to unrelated
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::23a509985783b27e6522b6103a14495e
https://doi.org/10.1101/2021.12.08.471225
https://doi.org/10.1101/2021.12.08.471225
Autor:
Alexandra E. Paharik, Karla Bergeron, Thomas J. Hannan, Timothy J. Straub, Ashlee M. Earl, Scott J. Hultgren, Wen-Chi Chou, Henry L. Schreiber, Andrew L. Kau, Christopher A. Desjardins, Abigail L. Manson, Ryan A. Bronson, Lucas R. van Dijk, Karen W. Dodson, Aleksandra Klim, Sinéad B. Chapman, Vanessa L. Muñoz, Chloe L. P. Obernuefemann, Jerome S. Pinkner, Colin J. Worby, Bruce J. Walker, H. Henry Lai, Benjamin Olson, Thomas M. Hooton
Recurrent urinary tract infections (rUTIs) are a major health burden worldwide, with history of infection being a significant risk factor. While the gut is a known reservoir for uropathogenic bacteria, the role of the microbiota in rUTI remains uncle
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::47c2ec320be5191412a9b591cb5e5f7f
https://doi.org/10.1101/2021.11.15.21266268
https://doi.org/10.1101/2021.11.15.21266268
Autor:
Sinéad B. Chapman, Christopher A. Desjardins, Bruce J. Walker, Meredith A. J. Hullar, Abigail L. Manson, Henry L. Schreiber, Kerrie L Kaspar, Timothy J. Straub, Karen W. Dodson, Orsalem J. Kahsai, Ashlee M. Earl, Wen-Chi Chou, Christina Khoo, Elizabeth Traylor, Scott J. Hultgren
Publikováno v:
BMC Microbiology
BMC Microbiology, Vol 21, Iss 1, Pp 1-17 (2021)
BMC Microbiology, Vol 21, Iss 1, Pp 1-17 (2021)
Background Urinary tract infections (UTIs) affect 15 million women each year in the United States, with > 20% experiencing frequent recurrent UTIs. A recent placebo-controlled clinical trial found a 39% reduction in UTI symptoms among recurrent UTI s
Autor:
Thomas Abeel, Arlin Keo, Timothy J. Straub, Abigail L. Manson, Christine Anyansi, Ashlee M. Earl, Bruce J. Walker
Publikováno v:
BMC Genomics, 21(1)
BMC Genomics, Vol 21, Iss 1, Pp 1-16 (2020)
BMC Genomics
BMC Genomics, Vol 21, Iss 1, Pp 1-16 (2020)
BMC Genomics
Background Mixed infections of Mycobacterium tuberculosis and antibiotic heteroresistance continue to complicate tuberculosis (TB) diagnosis and treatment. Detection of mixed infections has been limited to molecular genotyping techniques, which lack
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d494fee8d42e398eee1c0d551257231e