Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

Autor: Cesareni Gianni, Castagnoli Luisa, Iannuccelli Marta, Licata Luana, Briganti Leonardo, Perfetto Livia, Winter Andrew, Chatr-aryamontri Andrew, Tyers Mike

Publikováno v: BMC Bioinformatics, Vol 12, Iss Suppl 8, p S8 (2011)

Abstract Background The vast amount of data published in the primary biomedical literature represents a challenge for the automated extraction and codification of individual data elements. Biological databases that rely solely on manual extraction by

Externí odkaz: https://doaj.org/article/02c522f2cce64b539a1b3605d0cbbb26

Protein Interaction Data Curation - The International Molecular Exchange Consortium (IMEx)

Autor: Orchard, Sandra, Kerrien, Samuel, Abbani, Sara, Aranda, Bruno, Bhate, Jignesh, Bidwell, Shelby, Bridge, Alan, Briganti, Leonardo, Brinkman, Fiona, Cesareni, Gianni, Chatr-aryamontri, Andrew, Chautard, Emilie, Chen, Carol, Dumousseau, Marine, Goll, Johannes, Hancock, Robert, Hannick, Linda I, Jurisica, Igor, Khadake, Jyoti, Lynn, David J, Mahadevan, Usha, Perfetto, Livia, Raghunath, Arathi, Ricard-Blum, Sylvie, Roechert, Bernd, Salwinski, Lukasz, Stümpflen, Volker, Tyers, Mike, Uetz, Peter, Xenarios, Ioannis, Hermjakob, Henning

Publikováno v: Nature Methods; Vol 9

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=ec_fp7health::b2967a5a925e81c06dfe297e9a1a6772

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

Autor: Krallinger, Martin, Vazquez, Miguel, Leitner, Florian, Salgado, David, Chatr-aryamontri, Andrew, Winter, Andrew, Perfetto, Livia, Briganti, Leonardo, Licata, Luana, Iannuccelli, Marta, Castagnoli, Luisa, Cesareni, Gianni, Tyers, Mike, Schneider, Gerold, Rinaldi, Fabio, Leaman, Robert, Gonzalez, Graciela, Matos, Sergio, Kim, Sun, Wilbur, W, Rocha, Luis, Shatkay, Hagit, Tendulkar, Ashish V, Agarwal, Shashank, Liu, Feifan, Wang, Xinglong, Rak, Rafal, Noto, Keith, Elkan, Charles, Lu, Zhiyong, Dogan, Rezarta, Fontaine, Jean-Fred, Andrade-Navarro, Miguel A, Valencia, Alfonso

Publikováno v: Krallinger, Martin; Vazquez, Miguel; Leitner, Florian; Salgado, David; Chatr-aryamontri, Andrew; Winter, Andrew; et al.(2011). Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases. BMC Bioinformatics, 12(Suppl 8), S3. doi: http://dx.doi.org/10.1186/1471-2105-12-S8-S3. Retrieved from: http://www.escholarship.org/uc/item/44z3n3v1

Background Determining usefulness of biomedical text mining systems requires realistic task definition and data selection criteria without artificial constraints, measuring performance aspects that go beyond traditional metrics. The BioCreative III P

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::3b8d2c4db3376bb455be1cbd00b2fc06
http://www.escholarship.org/uc/item/44z3n3v1

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

Autor: Krallinger Martin, Vazquez Miguel, Leitner Florian, Salgado David, Chatr-Aryamontri Andrew, Winter Andrew, Perfetto Livia, Briganti Leonardo, Licata Luana, Iannuccelli Marta, Cesareni Gianni, Rinaldi Fabio, Leaman Robert, Gonzalez Graciela, Matos Sergio, Kim Sun, Wilbur John W., Rocha Luis, Tendulkar Ashish V, Agarwal Shashank, Liu Feifan, Wang Xinglong, Rak Rafal, Noto Keith, Elkan Charles

Publikováno v: BMC Bioinformatics special issue on BioCreative III

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=snsf_p3_pubs::a05ce93b739c900a78a98450671a6d8e
http://www.biomedcentral.com/1471-2105/12/S8/S3/

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