Zobrazeno 1 - 10
of 63
pro vyhledávání: '"Brian J Raney"'
Autor:
Hiram Clawson, Brian T. Lee, Brian J. Raney, Galt P. Barber, Jonathan Casper, Mark Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S. Hinrichs, Christopher M. Lee, Luis R. Nassar, Gerardo Perez, Brittney Wick, Daniel Schmelter, Matthew L. Speir, Joel Armstrong, Ann S. Zweig, Robert M. Kuhn, Bogdan M. Kirilenko, Michael Hiller, David Haussler, W. James Kent, Maximilian Haeussler
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-8 (2023)
Abstract Interactive graphical genome browsers are essential tools in genomics, but they do not contain all the recent genome assemblies. We create Genome Archive (GenArk) collection of UCSC Genome Browsers from NCBI assemblies. Built on our establis
Externí odkaz:
https://doaj.org/article/8226e568dade4fd09eb95b95cb4952fa
Autor:
Coen M. Adema, LaDeana W. Hillier, Catherine S. Jones, Eric S. Loker, Matty Knight, Patrick Minx, Guilherme Oliveira, Nithya Raghavan, Andrew Shedlock, Laurence Rodrigues do Amaral, Halime D. Arican-Goktas, Juliana G. Assis, Elio Hideo Baba, Olga L. Baron, Christopher J. Bayne, Utibe Bickham-Wright, Kyle K. Biggar, Michael Blouin, Bryony C. Bonning, Chris Botka, Joanna M. Bridger, Katherine M. Buckley, Sarah K. Buddenborg, Roberta Lima Caldeira, Julia Carleton, Omar S. Carvalho, Maria G. Castillo, Iain W. Chalmers, Mikkel Christensens, Sandra Clifton, Celine Cosseau, Christine Coustau, Richard M. Cripps, Yesid Cuesta-Astroz, Scott F. Cummins, Leon di Stefano, Nathalie Dinguirard, David Duval, Scott Emrich, Cédric Feschotte, Rene Feyereisen, Peter FitzGerald, Catrina Fronick, Lucinda Fulton, Richard Galinier, Sandra G. Gava, Michael Geusz, Kathrin K. Geyer, Gloria I. Giraldo-Calderón, Matheus de Souza Gomes, Michelle A. Gordy, Benjamin Gourbal, Christoph Grunau, Patrick C. Hanington, Karl F. Hoffmann, Daniel Hughes, Judith Humphries, Daniel J. Jackson, Liana K. Jannotti-Passos, Wander de Jesus Jeremias, Susan Jobling, Bishoy Kamel, Aurélie Kapusta, Satwant Kaur, Joris M. Koene, Andrea B. Kohn, Dan Lawson, Scott P Lawton, Di Liang, Yanin Limpanont, Sijun Liu, Anne E. Lockyer, TyAnna L. Lovato, Fernanda Ludolf, Vince Magrini, Donald P. McManus, Monica Medina, Milind Misra, Guillaume Mitta, Gerald M. Mkoji, Michael J. Montague, Cesar Montelongo, Leonid L. Moroz, Monica C. Munoz-Torres, Umar Niazi, Leslie R. Noble, Francislon S. Oliveira, Fabiano S. Pais, Anthony T. Papenfuss, Rob Peace, Janeth J. Pena, Emmanuel A. Pila, Titouan Quelais, Brian J. Raney, Jonathan P. Rast, David Rollinson, Izinara C. Rosse, Bronwyn Rotgans, Edwin J. Routledge, Kathryn M. Ryan, Larissa L. S. Scholte, Kenneth B. Storey, Martin Swain, Jacob A. Tennessen, Chad Tomlinson, Damian L. Trujillo, Emanuela V. Volpi, Anthony J. Walker, Tianfang Wang, Ittiprasert Wannaporn, Wesley C. Warren, Xiao-Jun Wu, Timothy P. Yoshino, Mohammed Yusuf, Si-Ming Zhang, Min Zhao, Richard K. Wilson
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-12 (2017)
Biomphalaria glabrata is a fresh water snail that acts as a host for trematode Schistosoma mansoni that causes intestinal infection in human. This work describes the genome and transcriptome analyses from 12 different tissues of B glabrata, and ident
Externí odkaz:
https://doaj.org/article/8e37a8f501a642c1ba7af6bed39bfe44
Autor:
Luis R Nassar, Galt P Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S Hinrichs, Brian T Lee, Christopher M Lee, Pranav Muthuraman, Beagan Nguy, Tiana Pereira, Parisa Nejad, Gerardo Perez, Brian J Raney, Daniel Schmelter, Matthew L Speir, Brittney D Wick, Ann S Zweig, David Haussler, Robert M Kuhn, Maximilian Haeussler, W James Kent
Publikováno v:
Nucleic Acids Res. 51, D1188–D1195 (2023)
Nucleic acids research, vol 51, iss D1
Nucleic acids research, vol 51, iss D1
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, and general bioinformatics resource that continues to serve the community as it enters its 23rd year. This year has seen an emphasis in clinical data,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::017814974d408c9c131fcfc5b62b4eff
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=66861
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=66861
Autor:
Maximilian Haeussler, Jairo Navarro Gonzalez, Pranav Muthuraman, Clay Fischer, Angie S. Hinrichs, Jonathan Casper, Beagan Nguy, Hiram Clawson, Kate R. Rosenbloom, Luis R Nassar, Ann S. Zweig, Tiana Pereira, Christopher Lee, Robert M. Kuhn, W. James Kent, Matthew L. Speir, Brittney D Wick, Galt P. Barber, Brian T. Lee, Daniel Schmelter, David Haussler, Anna Benet-Pagès, Gerardo Perez, Brian J. Raney, Mark Diekhans
Publikováno v:
Nucleic acids research, vol 50, iss D1
Nucleic Acids Research
Nucleic Acids Research
The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a810a05c2e772e61cca39e68ad73c7cf
https://doi.org/10.1093/nar/gkab959
https://doi.org/10.1093/nar/gkab959
Autor:
Surag Nair, Arjun Barrett, Daofeng Li, Brian J. Raney, Brian T. Lee, Peter Kerpedjiev, Vivekanandan Ramalingam, Anusri Pampari, Fritz Lekschas, Ting Wang, Maximilian Haeussler, Anshul Kundaje
Publikováno v:
Nature genetics, vol 54, iss 11
Nat Genet
Nat Genet
High-throughput experimental platforms have revolutionized the ability to profile biochemical and functional properties of biological sequences such as DNA, RNA and proteins. By collating several data modalities with customizable tracks rendered usin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::87f6c0dd41a6d0a4f34f6c2f8dd5e2a6
https://escholarship.org/uc/item/8km025qx
https://escholarship.org/uc/item/8km025qx
Autor:
Surag Nair, Arjun Barrett, Daofeng Li, Brian J Raney, Brian T Lee, Peter Kerpedjiev, Vivekanandan Ramalingam, Anusri Pampari, Fritz Lekschas, Ting Wang, Maximilian Haeussler, Anshul Kundaje
We introduce the dynseq genome browser track, which displays DNA nucleotide characters scaled by user-specified, base-resolution scores provided in the BigWig file format. The dynseq track enables visualization of context-specific, informative genomi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d7b4c3a730ec84d04a16ee2f62c8f175
https://doi.org/10.1101/2022.05.26.493621
https://doi.org/10.1101/2022.05.26.493621
Autor:
Lucas Seninge, W. James Kent, Alex A. Pollen, Pablo Moreno, Brian J. Raney, Nikolay S. Markov, Matthew L. Speir, Maximilian Haeussler, Aparna Bhaduri, Irene Papatheodorou, Tomasz J. Nowakowski
Publikováno v:
Bioinformatics (Oxford, England), vol 37, iss 23
Bioinformatics
Bioinformatics
Summary As the use of single-cell technologies has grown, so has the need for tools to explore these large, complicated datasets. The UCSC Cell Browser is a tool that allows scientists to visualize gene expression and metadata annotation distribution
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7864dbb2a6a97ad44dee5cb373e9ecf
https://escholarship.org/uc/item/021868s7
https://escholarship.org/uc/item/021868s7
Autor:
Brian T. Lee, Luis R Nassar, Daniel Schmelter, Jairo Navarro Gonzalez, Kate R. Rosenbloom, Jonathan Casper, Christopher Lee, W. James Kent, Hiram Clawson, Robert M. Kuhn, Anna Benet-Pagès, Gerardo Perez, Brian J. Raney, Ann S. Zweig, Maximillian Haeussler
The UCSC Genome Browser has been an important tool for genomics and clinical genetics since the sequence of the human genome was first released in 2000. As it has grown in scope to display more types of data it has also grown more complicated. The da
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e9d0258daf0f72d6ac15733e889e64a7
https://doi.org/10.22541/au.162547326.67836758/v1
https://doi.org/10.22541/au.162547326.67836758/v1
Autor:
Coen M. Adema, LaDeana W. Hillier, Catherine S. Jones, Eric S. Loker, Matty Knight, Patrick Minx, Guilherme Oliveira, Nithya Raghavan, Andrew Shedlock, Laurence Rodrigues do Amaral, Halime D. Arican-Goktas, Juliana G. Assis, Elio Hideo Baba, Olga L. Baron, Christopher J. Bayne, Utibe Bickham-Wright, Kyle K. Biggar, Michael Blouin, Bryony C. Bonning, Chris Botka, Joanna M. Bridger, Katherine M. Buckley, Sarah K. Buddenborg, Roberta Lima Caldeira, Julia Carleton, Omar S. Carvalho, Maria G. Castillo, Iain W. Chalmers, Mikkel Christensens, Sandra Clifton, Celine Cosseau, Christine Coustau, Richard M. Cripps, Yesid Cuesta-Astroz, Scott F. Cummins, Leon Di Stefano, Nathalie Dinguirard, David Duval, Scott Emrich, Cédric Feschotte, Rene Feyereisen, Peter FitzGerald, Catrina Fronick, Lucinda Fulton, Richard Galinier, Sandra G. Gava, Michael Geusz, Kathrin K. Geyer, Gloria I. Giraldo-Calderón, Matheus de Souza Gomes, Michelle A. Gordy, Benjamin Gourbal, Christoph Grunau, Patrick C. Hanington, Karl F. Hoffmann, Daniel Hughes, Judith Humphries, Daniel J. Jackson, Liana K. Jannotti-Passos, Wander de Jesus Jeremias, Susan Jobling, Bishoy Kamel, Aurélie Kapusta, Satwant Kaur, Joris M. Koene, Andrea B. Kohn, Dan Lawson, Scott P. Lawton, Di Liang, Yanin Limpanont, Sijun Liu, Anne E. Lockyer, Ty Anna L. Lovato, Fernanda Ludolf, Vince Magrini, Donald P. McManus, Monica Medina, Milind Misra, Guillaume Mitta, Gerald M. Mkoji, Michael J. Montague, Cesar Montelongo, Leonid L. Moroz, Monica C. Munoz-Torres, Umar Niazi, Leslie R. Noble, Francislon S. Oliveira, Fabiano S. Pais, Anthony T. Papenfuss, Rob Peace, Janeth J. Pena, Emmanuel A. Pila, Titouan Quelais, Brian J. Raney, Jonathan P. Rast, David Rollinson, Izinara C. Rosse, Bronwyn Rotgans, Edwin J. Routledge, Kathryn M. Ryan, Larissa L. S. Scholte, Kenneth B. Storey, Martin Swain, Jacob A. Tennessen, Chad Tomlinson, Damian L. Trujillo, Emanuela V. Volpi, Anthony J. Walker, Tianfang Wang, Ittiprasert Wannaporn, Wesley C. Warren, Xiao-Jun Wu, Timothy P. Yoshino, Mohammed Yusuf, Si-Ming Zhang, Min Zhao, Richard K. Wilson
Publikováno v:
Nature Communications, Vol 8, Iss 1, Pp 1-1 (2017)
Nature Communications 8: Article number: 15451 (2017); Published 16 May 2017; Updated 23 August 2017 The original version of this Article contained an error in the spelling of the author Leon Di Stefano, which was incorrectly given as Leon di Stephan
Externí odkaz:
https://doaj.org/article/60332dbd12834e6ba0138f0aae088ef8
Autor:
Conner C Powell, Kate R. Rosenbloom, Luis R Nassar, Angie S. Hinrichs, Jonathan Casper, Brian T. Lee, Ann S. Zweig, David Haussler, Brian J. Raney, Christopher Lee, Matthew L. Speir, Alastair C. Fyfe, Jason D Fernandes, Anna Benet-Pagès, W. James Kent, Nathan Maulding, Mark Diekhans, Robert M. Kuhn, Maximilian Haeussler, Jairo Navarro Gonzalez, Galt P. Barber, Hiram Clawson, Daniel Schmelter
Publikováno v:
Nucleic acids research, vol 49, iss D1
Nucleic Acids Research
Nucleic Acids Research
For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome annotations to the research community. As the field of genomics grows and more data become availabl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f16f8229646e91a581bfa7ddf0c4057
https://escholarship.org/uc/item/0qk9n5s0
https://escholarship.org/uc/item/0qk9n5s0