Zobrazeno 1 - 10
of 89
pro vyhledávání: '"Brejova, Brona"'
Publikováno v:
Lecture Notes in Computer Science, vol 12813. Springer, 2021, p.227-236
In this article, we review existing probabilistic models for modeling abundance of fixed-length strings (k-mers) in DNA sequencing data. These models capture dependence of the abundance on various phenomena, such as the size and repeat content of the
Externí odkaz:
http://arxiv.org/abs/2112.15107
Autor:
Medo, Matus, Suster, Martin, Bodova, Katarina, Brazinova, Alexandra, Brejova, Brona, Kollar, Richard, Leksa, Vladimir, Lindbloom, Jana, Nosek, Jozef, Vinar, Tomas
Pavelka et al. (Science, Reports, 7 May 2021) claim that a single round of population-wide antigen testing in Slovakia reduced the observed COVID-19 prevalence by 58%, and that it played a substantial role in curbing the pandemic. We argue that this
Externí odkaz:
http://arxiv.org/abs/2105.13633
In nanopore sequencing, electrical signal is measured as DNA molecules pass through the sequencing pores. Translating these signals into DNA bases (base calling) is a highly non-trivial task, and its quality has a large impact on the sequencing accur
Externí odkaz:
http://arxiv.org/abs/2105.07520
Autor:
Brejová, Broňa, Hodorová, Viktória, Boršová, Kristína, Čabanová, Viktória, Reizigová, Lenka, Paul, Evan D., Čekan, Pavol, Klempa, Boris, Nosek, Jozef, Vinař, Tomáš
SARS-CoV-2 mutants carrying the $\Delta$H69/$\Delta$V70 deletion in the amino terminal domain of the Spike protein emerged independently in at least six lineages of the virus (namely, B.1.1.7, B.1.1.298, B.1.160, B.1.177, B.1.258, B.1.375). Routine R
Externí odkaz:
http://arxiv.org/abs/2102.04689
We developed a new base caller DeepNano-coral for nanopore sequencing, which is optimized to run on the Coral Edge Tensor Processing Unit, a small USB-attached hardware accelerator. To achieve this goal, we have designed new versions of two key compo
Externí odkaz:
http://arxiv.org/abs/2011.04312
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Akademický článek
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We investigate usage of dynamic time warping (DTW) algorithm for aligning raw signal data from MinION sequencer. DTW is mostly using for fast alignment for selective sequencing to quickly determine whether a read comes from sequence of interest. We s
Externí odkaz:
http://arxiv.org/abs/1705.01620
Oxford Nanopore MinION sequencer is currently the smallest sequencing device available. While being able to produce very long reads (reads of up to 100~kbp were reported), it is prone to high sequencing error rates of up to 30%. Since most of these e
Externí odkaz:
http://arxiv.org/abs/1606.08719
Publikováno v:
PLoS ONE 12(6): e0178751
Motivation: The MinION device by Oxford Nanopore is the first portable sequencing device. MinION is able to produce very long reads (reads over 100~kBp were reported), however it suffers from high sequencing error rate. In this paper, we show that th
Externí odkaz:
http://arxiv.org/abs/1603.09195