Zobrazeno 1 - 10
of 56
pro vyhledávání: '"Brandy Klotzle"'
Autor:
Jian-Bing Fan, Jing Chen, Craig S. April, Jeffrey S. Fisher, Brandy Klotzle, Marina Bibikova, Fiona Kaper, Mostafa Ronaghi, Sten Linnarsson, Takayo Ota, Jeremy Chien, Louise C. Laurent, Jeanne F. Loring, Sean V. Nisperos, Gina Y. Chen, Jiang F. Zhong
Publikováno v:
PLoS ONE, Vol 7, Iss 2 (2012)
Externí odkaz:
https://doaj.org/article/a8d81506a0b14f5e8e845b13db8caa1a
Autor:
Jian-Bing Fan, Jing Chen, Craig S April, Jeffrey S Fisher, Brandy Klotzle, Marina Bibikova, Fiona Kaper, Mostafa Ronaghi, Sten Linnarsson, Takayo Ota, Jeremy Chien, Louise C Laurent, Jeanne F Loring, Sean V Nisperos, Gina Y Chen, Jiang F Zhong
Publikováno v:
PLoS ONE, Vol 7, Iss 2, p e30794 (2012)
We have developed a high-throughput amplification method for generating robust gene expression profiles using single cell or low RNA inputs.The method uses tagged priming and template-switching, resulting in the incorporation of universal PCR priming
Externí odkaz:
https://doaj.org/article/b0a70056631d4e56920592599daf2cfb
Autor:
Craig April, Brandy Klotzle, Thomas Royce, Eliza Wickham-Garcia, Tanya Boyaniwsky, John Izzo, Donald Cox, Wendell Jones, Renee Rubio, Kristina Holton, Ursula Matulonis, John Quackenbush, Jian-Bing Fan
Publikováno v:
PLoS ONE, Vol 4, Iss 12, p e8162 (2009)
We have developed a gene expression assay (Whole-Genome DASL), capable of generating whole-genome gene expression profiles from degraded samples such as formalin-fixed, paraffin-embedded (FFPE) specimens.We demonstrated a similar level of sensitivity
Externí odkaz:
https://doaj.org/article/0735bd5dd3434e959c37db5983211d2e
Autor:
Paul S. Meltzer, Lee Helman, Jian-Bing Fan, Joshua D. Schiffman, Katherine A. Janeway, Constantine Stratakis, Karel Pacak, Marina Bibikova, Maureen J. O'Sullivan, Joshua J. Waterfall, Yonghong Wang, Yuelin Zhu, Laura Jones, Zengfeng Wang, Brandy Klotzle, Mark Raffeld, Jerzy Lasota, Robert L. Walker, Eva Szarek, Paraskevi Xekouki, Mona S. Jahromi, William I. Smith, Martha Quezado, Maria Tsokos, Maria Merino, Carly Smith, Markku Miettinen, Su Young Kim, J. Keith Killian
Supplementary Figure 1 - PDF file 1233K, Supplemental Figure 1: Representative array comparative genomic hybridization (aCGH) results of genomic copy number near-normal GIST (left column, n=5) and genomic copy number abnormal GIST (right column, n=5)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f34911773e60f32682a85666c24a414e
https://doi.org/10.1158/2159-8290.22529759
https://doi.org/10.1158/2159-8290.22529759
Autor:
Paul S. Meltzer, Lee Helman, Jian-Bing Fan, Joshua D. Schiffman, Katherine A. Janeway, Constantine Stratakis, Karel Pacak, Marina Bibikova, Maureen J. O'Sullivan, Joshua J. Waterfall, Yonghong Wang, Yuelin Zhu, Laura Jones, Zengfeng Wang, Brandy Klotzle, Mark Raffeld, Jerzy Lasota, Robert L. Walker, Eva Szarek, Paraskevi Xekouki, Mona S. Jahromi, William I. Smith, Martha Quezado, Maria Tsokos, Maria Merino, Carly Smith, Markku Miettinen, Su Young Kim, J. Keith Killian
Supplementary Table 1 XLS file 22K, Tumors and reference tissues for methylation microarray analysis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c95d980f0a77cc43ebd1e4ea6202aa2
https://doi.org/10.1158/2159-8290.22529756.v1
https://doi.org/10.1158/2159-8290.22529756.v1
Autor:
Paul S. Meltzer, Lee Helman, Jian-Bing Fan, Joshua D. Schiffman, Katherine A. Janeway, Constantine Stratakis, Karel Pacak, Marina Bibikova, Maureen J. O'Sullivan, Joshua J. Waterfall, Yonghong Wang, Yuelin Zhu, Laura Jones, Zengfeng Wang, Brandy Klotzle, Mark Raffeld, Jerzy Lasota, Robert L. Walker, Eva Szarek, Paraskevi Xekouki, Mona S. Jahromi, William I. Smith, Martha Quezado, Maria Tsokos, Maria Merino, Carly Smith, Markku Miettinen, Su Young Kim, J. Keith Killian
Supplementary Table 2 XLSX file 490K, Illumina GoldenGate Methylation Standard Cancer Panel I Target CpG Annotations and differential methylation significance values for group comparisons listed in Table
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56b3c7f7b5fc98799a7dd48f5c2e1195
https://doi.org/10.1158/2159-8290.22529753.v1
https://doi.org/10.1158/2159-8290.22529753.v1
Autor:
Janet L. Stanford, Ziding Feng, Jian-Bing Fan, Elaine A. Ostrander, Brandy Klotzle, Marina Bibikova, Suzanne Kolb, Jonathan L. Wright, Shanshan Zhao, Marni Stott-Miller
Background: One challenge in prostate cancer is distinguishing indolent from aggressive disease at diagnosis. DNA promoter hypermethylation is a frequent epigenetic event in prostate cancer, but few studies of DNA methylation in relation to features
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::443f97a060a9a9de4a30c3381bc70085
https://doi.org/10.1158/1055-9965.c.6515734.v1
https://doi.org/10.1158/1055-9965.c.6515734.v1
Autor:
Janet L. Stanford, Ziding Feng, Jian-Bing Fan, Elaine A. Ostrander, Jonathan L. Wright, Daniel W. Lin, Raymond Lance, Dean Troyer, Antonio Hurtado-Coll, Marina Bibikova, Brandy Klotzle, Qingxiang Yan, Suzanne Kolb, Rohina Rubicz, Amy Leonardson, Milan S. Geybels, Shanshan Zhao
Purpose: Aside from Gleason sum, few factors accurately identify the subset of prostate cancer patients at high risk for metastatic progression. We hypothesized that epigenetic alterations could distinguish prostate tumors with life-threatening poten
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::08b436373645fb4e4678063fa158c6cb
https://doi.org/10.1158/1078-0432.c.6526622.v1
https://doi.org/10.1158/1078-0432.c.6526622.v1
Autor:
Janet L. Stanford, Ziding Feng, Jian-Bing Fan, Elaine A. Ostrander, Brandy Klotzle, Marina Bibikova, Suzanne Kolb, Jonathan L. Wright, Shanshan Zhao, Marni Stott-Miller
PDF file - 57K, Genes with over 50% of the 5' region CpG sites having higher methylation in tumor tissue from prostate cancer patients with recurrence versus no recurrence.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bac1c2f4a77256afe555a888b0145dbb
https://doi.org/10.1158/1055-9965.22437115
https://doi.org/10.1158/1055-9965.22437115
Autor:
Janet L. Stanford, Ziding Feng, Jian-Bing Fan, Elaine A. Ostrander, Jonathan L. Wright, Daniel W. Lin, Raymond Lance, Dean Troyer, Antonio Hurtado-Coll, Marina Bibikova, Brandy Klotzle, Qingxiang Yan, Suzanne Kolb, Rohina Rubicz, Amy Leonardson, Milan S. Geybels, Shanshan Zhao
Number of time the 42 DNA methylation biomarkers were selected in the bootstrap samples
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5c3dce592f22f78188640e0fbe432869
https://doi.org/10.1158/1078-0432.22467356.v1
https://doi.org/10.1158/1078-0432.22467356.v1