Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions

Autor: Martin Schmidt, Michiel Van Bel, Magdalena Woloszynska, Bram Slabbinck, Cindy Martens, Marc De Block, Frederik Coppens, Mieke Van Lijsebettens

Publikováno v: BMC Plant Biology, Vol 17, Iss 1, Pp 1-14 (2017)

Abstract Background Cytosine methylation in plant genomes is important for the regulation of gene transcription and transposon activity. Genome-wide methylomes are studied upon mutation of the DNA methyltransferases, adaptation to environmental stres

Externí odkaz: https://doaj.org/article/fd4edf56b4e144ada2c65496f657cf3c

Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture

Autor: Bram Slabbinck, Frederik Coppens, Steven Maere, Twiggy Van Daele, Katrien Maleux, Dorota Herman, Liesbeth De Milde, Pieter Clauw, Arthur Korte, Dirk Inzé, Mattias Vermeersch, Nathalie Gonzalez, Stijn Dhondt

Publikováno v: The Plant cell
The Plant cell, American Society of Plant Biologists (ASPB), 2016, 28 (10), pp.2417-2434. ⟨10.1105/tpc.16.00483⟩
Plant Cell
Plant Cell, American Society of Plant Biologists, 2016, 28 (10), pp.2417-2434. ⟨10.1105/tpc.16.00483⟩
PLANT CELL

BFP - Equipe OrFE; Plant growth and crop yield are negatively affected by a reduction in water availability. However, a clear understanding of how growth is regulated under nonlethal drought conditions is lacking. Recent advances in genomics, phenomi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::70df11f67936fe302bfa2da5fe396402
https://hal.archives-ouvertes.fr/hal-01602195

Supervised learning algorithms for multi-class classification problems with partial class memberships

Autor: Jan Verwaeren, Willem Waegeman, Bernard De Baets, Bram Slabbinck

Publikováno v: Fuzzy Sets and Systems. 184:106-125

In several application domains such as biology, computer vision, social network analysis and information retrieval, multi-class classification problems arise in which data instances not simply belong to one particular class, but exhibit a partial mem

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::dab844e497b3db22cac75293e2488315
https://doi.org/10.1016/j.fss.2010.11.012

Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population

Autor: Bram Slabbinck, Joke Baute, Matteo Dell’Acqua, Frederik Coppens, Hilde Nelissen, Steven Maere, Dirk Inzé, Jolien De Block, Mario Enrico Pè, Dorota Herman

Publikováno v: GENOME BIOLOGY
Genome Biology

Background: To sustain the global requirements for food and renewable resources, unraveling the molecular networks underlying plant growth is becoming pivotal. Although several approaches to identify genes and networks involved in final organ size ha

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6a8c88f8519a8fb9d32607bc0f554e60
http://hdl.handle.net/11382/503533

StrainInfo.net Web Services: Enabling Microbiologic Workflows Such as Phylogenetic Tree Building and Biomarker Comparison

Autor: Peter Dawyndt, W. De Smet, Bram Slabbinck, B. De Baets, P. De Vos, Bert Verslyppe

Publikováno v: eScience

In this paper we present novel web services offered by the StrainInfo.net bioportal. This portal integrates information in the domain of microbiology and offers a uniform web interface to a multitude of data providers. By providing web services, the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::192f45ba228154c512ffed5074a7a78c
https://doi.org/10.1109/escience.2008.165