Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Bragantini, Jordão"'
In this work, we describe a method for large-scale 3D cell-tracking through a segmentation selection approach. The proposed method is effective at tracking cells across large microscopy datasets on two fronts: (i) It can solve problems containing mil
Externí odkaz:
http://arxiv.org/abs/2308.04526
Publikováno v:
In Pattern Recognition November 2022 131
Akademický článek
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Autor:
Yang, Bin, Lange, Merlin, Millett-Sikking, Alfred, Zhao, Xiang, Bragantini, Jordão, VijayKumar, Shruthi, Kamb, Mason, Gómez-Sjöberg, Rafael, Solak, Ahmet Can, Wang, Wanpeng, Kobayashi, Hirofumi, McCarroll, Matthew N, Whitehead, Lachlan W, Fiolka, Reto P, Kornberg, Thomas B, York, Andrew G, Royer, Loic A
Publikováno v:
Nature methods, vol 19, iss 4
The promise of single-objective light-sheet microscopy is to combine the convenience of standard single-objective microscopes with the speed, coverage, resolution and gentleness of light-sheet microscopes. We present DaXi, a single-objective light-sh
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::4e48afbe8721b979c3547294358fbe3e
https://escholarship.org/uc/item/2138s4k7
https://escholarship.org/uc/item/2138s4k7
Autor:
Bragantini, Jordão, 1996
Publikováno v:
Biblioteca Digital de Teses e Dissertações da Universidade Estadual de Campinas (UNICAMP)
Universidade Estadual de Campinas (UNICAMP)
instacron:UNICAMP
Universidade Estadual de Campinas (UNICAMP)
instacron:UNICAMP
Orientador: Alexandre Xavier Falcão Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Computação Resumo: Nos últimos anos, algoritmos de aprendizado de máquina se tornaram a abordagem predominante para resolução de div
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od______3056::7f3de12e9949b4a18c4733011d3ae08b
Publikováno v:
In Pattern Recognition Letters December 2020 140:267-273
Akademický článek
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Autor:
Eck E; Biophysics Graduate Group, University of California at Berkeley, Berkeley, USA., Moretti B; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA, USA., Schlomann BH; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA., Bragantini J; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA, USA., Lange M; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA, USA., Zhao X; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA, USA., VijayKumar S; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA, USA., Valentin G; Institute of Bioengineering, EPFL; Lausanne, CH., Loureiro C; Institute of Bioengineering, EPFL; Lausanne, CH., Soroldoni D; Institute of Bioengineering, EPFL; Lausanne, CH., Royer LA; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA, USA., Oates AC; Institute of Bioengineering, EPFL; Lausanne, CH.; Department of Cell and Developmental Biology, UCL; London, UK.; The Francis Crick Institute; London, UK., Garcia HG; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.; Department of Physics, University of California, Berkeley, CA, USA.; Institute for Quantitative Biosciences-QB3, University of California, Berkeley, CA, USA.; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA, USA.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2024 Jan 04. Date of Electronic Publication: 2024 Jan 04.
Autor:
Moore J; German BioImaging - Gesellschaft für Mikroskopie und Bildanalyse e.V., Konstanz, Germany., Basurto-Lozada D; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK., Besson S; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Bogovic J; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Bragantini J; Chan Zuckerberg Biohub, San Francisco, CA, United States., Brown EM; Allen Institute for Cell Science, Seattle, WA, USA., Burel JM; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Moreno XC; Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden., de Medeiros G; Friedrich Miescher Institute for Biomedical Imaging, Basel, Switzerland., Diel EE; Glencoe Software Inc., Seattle, WA, USA., Gault D; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Ghosh SS; Massachusetts Institute of Technology: Cambridge, MA, USA., Gold I; Harvard Medical School, Boston, MA, USA., Halchenko YO; Dartmouth College, Hanover, NH, USA., Hartley M; European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Cambridge, UK., Horsfall D; Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK., Keller MS; Harvard Medical School, Boston, MA, USA., Kittisopikul M; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Kovacs G; Allen Institute for Neural Dynamics, Seattle, WA, USA., Yoldaş AK; European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Cambridge, UK., Kyoda K; RIKEN Center for Biosystems Dynamics Research, Kobe, Japan., de la Villegeorges ALT; scalable minds GmbH, Potsdam, Germany., Li T; Wellcome Sanger Institute, Hinxton, UK., Liberali P; Friedrich Miescher Institute for Biomedical Imaging, Basel, Switzerland., Lindner D; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Linkert M; Glencoe Software Inc., Seattle, WA, USA., Lüthi J; Friedrich Miescher Institute for Biomedical Imaging, Basel, Switzerland., Maitin-Shepard J; Google Research, Mountain View, CA, USA., Manz T; Harvard Medical School, Boston, MA, USA., Marconato L; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany., McCormick M; Kitware, Inc, Carrboro, NC, USA., Lange M; Chan Zuckerberg Biohub, San Francisco, CA, United States., Mohamed K; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Moore W; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Norlin N; Department of Experimental Medical Science & Lund Bioimaging Centre, Lund University, Lund, Sweden., Ouyang W; Science for Life Laboratory, KTH Royal Institute of Technology, Stockholm, Sweden., Özdemir B; Euro-BioImaging Bio-Hub, EMBL Heidelberg, Germany., Palla G; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Pape C; Georg-August Universität Göttingen, Germany., Pelkmans L; University of Zurich, Zurich, Switzerland., Pietzsch T; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Preibisch S; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Prete M; Wellcome Sanger Institute, Hinxton, UK., Rzepka N; scalable minds GmbH, Potsdam, Germany., Samee S; Axle Research and Technology., Schaub N; Information Technology Branch, National Center for Advancing Translational Science, National Institutes of Health., Sidky H; Axle Research and Technology., Solak AC; Chan Zuckerberg Biohub, San Francisco, CA, United States., Stirling DR; Glencoe Software Inc., Seattle, WA, USA., Striebel J; scalable minds GmbH, Potsdam, Germany., Tischer C; EMBL Heidelberg, Germany., Toloudis D; Allen Institute for Cell Science, Seattle, WA, USA., Virshup I; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Walczysko P; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Watson AM; University of Pittsburgh, Pittsburgh, PA, USA., Weisbart E; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Wong F; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK., Yamauchi KA; Department of Biosystems Science and Engineering, ETH Zürich, Switzerland., Bayraktar O; Wellcome Sanger Institute, Hinxton, UK., Cimini BA; Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA., Gehlenborg N; Harvard Medical School, Boston, MA, USA., Haniffa M; Wellcome Sanger Institute, Hinxton, UK., Hotaling N; Information Technology Branch, National Center for Advancing Translational Science, National Institutes of Health., Onami S; RIKEN Center for Biosystems Dynamics Research, Kobe, Japan., Royer LA; Chan Zuckerberg Biohub, San Francisco, CA, United States., Saalfeld S; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA., Stegle O; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany., Theis FJ; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany., Swedlow JR; Divisions of Molecular Cell and Developmental Biology, and Computational Biology, University of Dundee, Dundee, Scotland, UK.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 May 07. Date of Electronic Publication: 2023 May 07.
Autor:
Yang B; Chan Zuckerberg Biohub, San Francisco, CA, USA. bin.yang@czbiohub.org., Lange M; Chan Zuckerberg Biohub, San Francisco, CA, USA., Millett-Sikking A; Calico Life Sciences LLC, South San Francisco, CA, USA., Zhao X; Chan Zuckerberg Biohub, San Francisco, CA, USA., Bragantini J; Chan Zuckerberg Biohub, San Francisco, CA, USA., VijayKumar S; Chan Zuckerberg Biohub, San Francisco, CA, USA., Kamb M; Chan Zuckerberg Biohub, San Francisco, CA, USA., Gómez-Sjöberg R; Chan Zuckerberg Biohub, San Francisco, CA, USA., Solak AC; Chan Zuckerberg Biohub, San Francisco, CA, USA., Wang W; Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, CA, USA., Kobayashi H; Chan Zuckerberg Biohub, San Francisco, CA, USA., McCarroll MN; Department of Pharmaceutical Chemistry, University of California, San Francisco (UCSF), San Francisco, CA, USA., Whitehead LW; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia., Fiolka RP; Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.; Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, USA., Kornberg TB; Cardiovascular Research Institute, University of California, San Francisco (UCSF), San Francisco, CA, USA., York AG; Calico Life Sciences LLC, South San Francisco, CA, USA., Royer LA; Chan Zuckerberg Biohub, San Francisco, CA, USA. loic.royer@czbiohub.org.
Publikováno v:
Nature methods [Nat Methods] 2022 Apr; Vol. 19 (4), pp. 461-469. Date of Electronic Publication: 2022 Mar 21.