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Harmonizing model organism data in the Alliance of Genome Resources

Autor: Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzanne A., Alexander, Micheal, Anagnostopoulos, Anna V., Antonazzo, Giulia, Argasinska, Joanna, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M., Blake, Judith A., Blodgett, Olin, Bradford, Yvonne M., Bult, Carol J., Cain, Scott, Calvi, Brian R., Carbon, Seth, Chan, Juancarlos, Chen, Wen J., Cherry, J. Michael, Cho, Jaehyoung, Christie, Karen R., Crosby, Madeline A., Davis, Paul, da Veiga Beltrame, Eduardo, De Pons, Jeffrey L., D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E., dos Santos, Gilberto, Douglass, Eric, Dunn, Barbara, Eagle, Anne, Ebert, Dustin, Engel, Stacia R., Fashena, David, Foley, Saoirse, Frazer, Ken, Gao, Sibyl, Gibson, Adam C., Gondwe, Felix, Goodman, Josh, Gramates, L. Sian, Grove, Christian A., Hale, Paul, Harris, Todd, Thomas Hayman, G., Hill, David P., Howe, Douglas G., Howe, Kevin L., Hu, Yanhui, Jha, Sagar, Kadin, James A., Kaufman, Thomas C., Kalita, Patrick, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E., Laulederkind, Stanley J. F., Lee, Raymond, Longden, Ian, Luypaert, Manuel, MacPherson, Kevin A., Martin, Ryan, Marygold, Steven J., Matthews, Beverley, McAndrews, Monica S., Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Müller, Hans-Michael, Mungall, Christopher J., Muruganujan, Anushya, Mushayahama, Tremayne, Nalabolu, Harika S., Nash, Robert S., Ng, Patrick, Nuin, Paulo, Paddock, Holly, Paulini, Michael, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E., Russo Gelbart, Susan, Ruzicka, Leyla, Schaper, Kevin, Schindelman, Gary, Shimoyama, Mary, Simison, Matt, Shaw, David R., Shrivatsav, Ajay, Singer, Amy, Skrzypek, Marek, Smith, Constance M., Smith, Cynthia L., Smith, Jennifer R., Stein, Lincoln, Sternberg, Paul W., Tabone, Christopher J., Thomas, Paul D., Thorat, Ketaki, Thota, Jyothi, Toro, Sabrina, Tomczuk, Monika, Trovisco, Vitor, Tutaj, Marek A., Tutaj, Monika, Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E., Wang, Qinghua, Wang, Shur-Jen, Weng, Shuai, Westerfield, Monte, Williams, Gary, Wilming, Laurens G., Wong, Edith D., Wright, Adam, Yook, Karen, Zarowiecki, Magdalena, Zhou, Pinglei, Zytkovicz, Mark

Publikováno v: Genetics. 220(4)

The Alliance of Genome Resources (the Alliance) is a combined effort of 7 knowledgebase projects: Saccharomyces Genome Database, WormBase, FlyBase, Mouse Genome Database, the Zebrafish Information Network, Rat Genome Database, and the Gene Ontology R

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1aeec3b3b4307aadf31482739fdc574
https://pubmed.ncbi.nlm.nih.gov/35380658

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Phenotype Ontologies Traversing All The Organisms (POTATO) workshop aims to reconcile logical definitions across species

Autor: Matentzoglu, Nicolas, Balhoff, James P., Bello, Susan M., Boerkoel, Cornelius F., Bradford, Yvonne M., Carmody, Leigh C., Cooper, Laurel D., Grove, Christian A., Harris, Nomi L., Köhler, Sebastian, Laporte, Marie-Angélique, Laulederkind, Stanley L.F., Lee, Raymond, Mazandu, Gaston K., McMurry, Julie A., Mungall, Chris, Osumi-Sutherland, David, Pilgrim, Clare, Rageth, Kayli, Robb, Sofia M.C., Robinson, Peter N., Segerdell, Erik, Thessen, Anne, Vasilevsky, Nicole, Zhang, Xingmin A., Haendel, Melissa A.

Logical definitions, in particular those following the Entity-Quality approach, are increasingly used to drive automated classification of phenotypes and integrate phenotypes across species semantically. Over the years, the lack of consistent and wid

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26084e6162f33846da476e873e928483

The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.

Autor: Van Slyke, Ceri E.¹ van_slyke@zfin.org, Bradford, Yvonne M.¹ ybradford@zfin.org, Westerfield, Monte^1,2 monte@uoneuro.uoregon.edu, Haendel, Melissa A.³ haendel@ohsu.edu

Publikováno v: Journal of Biomedical Semantics. 2014, Vol. 5 Issue 1, p1-23. 23p.