Multimodal representations of biomedical knowledge from limited training whole slide images and reports using deep learning.

Autor: Marini N; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland. Electronic address: niccolo.marini@hevs.ch., Marchesin S; Department of Information Engineering, University of Padua, Padua, Italy. Electronic address: stefano.marchesin@unipd.it., Wodzinski M; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland; Department of Measurement and Electronics, AGH University of Kraków, Krakow, Poland., Caputo A; Department of Pathology, Ruggi University Hospital, Salerno, Italy; Pathology Unit, Gravina Hospital Caltagirone ASP, Catania, Italy., Podareanu D; SURFsara, Amsterdam, The Netherlands., Guevara BC; SURFsara, Amsterdam, The Netherlands., Boytcheva S; Ontotext, Sofia, Bulgaria; Institute of Information and Communication Technologies, Bulgarian Academy of Sciences, Sofia, Bulgaria., Vatrano S; Pathology Unit, Gravina Hospital Caltagirone ASP, Catania, Italy., Fraggetta F; Pathology Unit, Gravina Hospital Caltagirone ASP, Catania, Italy; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands., Ciompi F; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands., Silvello G; Department of Information Engineering, University of Padua, Padua, Italy., Müller H; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland; Medical faculty, University of Geneva, 1211 Geneva, Switzerland., Atzori M; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland; Department of Neurosciences, University of Padua, Padua, Italy.

Publikováno v: Medical image analysis [Med Image Anal] 2024 Oct; Vol. 97, pp. 103303. Date of Electronic Publication: 2024 Aug 14.

Modelling digital health data: The ExaMode ontology for computational pathology.

Autor: Menotti L; Department of Information Engineering, University of Padua, Padova, Italy., Silvello G; Department of Information Engineering, University of Padua, Padova, Italy., Atzori M; Information Systems Institute, University of Applied Sciences Western Switzerland, Delémont, Switzerland.; Department of Neuroscience, University of Padua, Padova, Italy., Boytcheva S; Sirma AI, Sofia, Bulgaria., Ciompi F; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands., Di Nunzio GM; Department of Information Engineering, University of Padua, Padova, Italy., Fraggetta F; Pathology Unit Gravina Hospital Caltagirone ASP, Caltagirone, Italy., Giachelle F; Department of Information Engineering, University of Padua, Padova, Italy., Irrera O; Department of Information Engineering, University of Padua, Padova, Italy., Marchesin S; Department of Information Engineering, University of Padua, Padova, Italy., Marini N; Information Systems Institute, University of Applied Sciences Western Switzerland, Delémont, Switzerland., Müller H; Information Systems Institute, University of Applied Sciences Western Switzerland, Delémont, Switzerland., Primov T; Sirma AI, Sofia, Bulgaria.

Publikováno v: Journal of pathology informatics [J Pathol Inform] 2023 Aug 22; Vol. 14, pp. 100332. Date of Electronic Publication: 2023 Aug 22 (Print Publication: 2023).

Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations.

Autor: Marini N; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland. niccolo.marini@hevs.ch.; Centre Universitaire d'Informatique, University of Geneva, Geneva, Switzerland. niccolo.marini@hevs.ch., Marchesin S; Department of Information Engineering, University of Padua, Padua, Italy., Otálora S; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland.; Centre Universitaire d'Informatique, University of Geneva, Geneva, Switzerland., Wodzinski M; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland.; Department of Measurement and Electronics, AGH University of Science and Technology, Krakow, Poland., Caputo A; Department of Pathology, Ruggi University Hospital, Salerno, Italy.; Pathology Unit, Gravina Hospital Caltagirone ASP, Catania, Italy., van Rijthoven M; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands., Aswolinskiy W; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands., Bokhorst JM; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands., Podareanu D; SURFsara, Amsterdam, The Netherlands., Petters E; MicroscopeIT, Wrocław, Poland., Boytcheva S; Sirma AI, Sofia, Bulgaria.; Institute of Information and Communication Technologies, Bulgarian Academy of Sciences, Sofia, Bulgaria., Buttafuoco G; Pathology Unit, Gravina Hospital Caltagirone ASP, Catania, Italy., Vatrano S; Pathology Unit, Gravina Hospital Caltagirone ASP, Catania, Italy., Fraggetta F; Pathology Unit, Gravina Hospital Caltagirone ASP, Catania, Italy.; Pathology Unit, Cannizzaro Hospital, Catania, Italy., van der Laak J; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands.; Center for Medical Image Science and Visualization, Linkoping University, Linkoping, Sweden., Agosti M; Department of Information Engineering, University of Padua, Padua, Italy., Ciompi F; Department of Pathology, Radboud University Medical Center, Nijmegen, The Netherlands., Silvello G; Department of Information Engineering, University of Padua, Padua, Italy., Muller H; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland.; Medical Faculty, University of Geneva, Geneva, Switzerland., Atzori M; Information Systems Institute, University of Applied Sciences Western Switzerland (HES-SO Valais), Sierre, Switzerland.; Department of Neuroscience, University of Padua, Padua, Italy.

Publikováno v: NPJ digital medicine [NPJ Digit Med] 2022 Jul 22; Vol. 5 (1), pp. 102. Date of Electronic Publication: 2022 Jul 22.

Classification of lumbar spine disorders using large language models and MRI segmentation.

Autor: Dong, Rongpeng¹ (AUTHOR), Cheng, Xueliang¹ (AUTHOR), Kang, Mingyang¹ (AUTHOR), Qu, Yang¹ (AUTHOR) quy@jlu.edu.cn

Publikováno v: BMC Medical Informatics & Decision Making. 11/18/2024, Vol. 24 Issue 1, p1-18. 18p.

An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology.

Autor: Faggioli, Guglielmo¹ (AUTHOR) guglielmo.faggioli@unipd.it, Menotti, Laura¹ (AUTHOR) laura.menotti@unipd.it, Marchesin, Stefano¹ (AUTHOR) stefano.marchesin@unipd.it, Chió, Adriano^2,3,4 (AUTHOR), Dagliati, Arianna⁵ (AUTHOR), de Carvalho, Mamede⁶ (AUTHOR), Gromicho, Marta⁶ (AUTHOR), Manera, Umberto² (AUTHOR), Tavazzi, Eleonora⁷ (AUTHOR), Di Nunzio, Giorgio Maria¹ (AUTHOR), Silvello, Gianmaria¹ (AUTHOR), Ferro, Nicola¹ (AUTHOR)

Publikováno v: Journal of Biomedical Semantics. 8/30/2024, Vol. 15 Issue 1, p1-28. 28p.