OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging

Autor: De Raad, M, De Rond, T, Rübel, O, Keasling, JD, Northen, TR, Bowen, BP

Publikováno v: Analytical chemistry, vol 89, iss 11
De Raad, M; De Rond, T; Rübel, O; Keasling, JD; Northen, TR; & Bowen, BP. (2017). OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging. Analytical Chemistry, 89(11), 5818-5823. doi: 10.1021/acs.analchem.6b05004. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/3dr6w57j

© 2017 American Chemical Society. Mass spectrometry imaging (MSI) has primarily been applied in localizing biomolecules within biological matrices. Although well-suited, the application of MSI for comparing thousands of spatially defined spotted sam

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::6112cd9507870dd03f79d1b07e68ca5e
https://escholarship.org/uc/item/3dr6w57j

Exometabolite niche partitioning among sympatric soil bacteria

Autor: Baran, R, Brodie, EL, Mayberry-Lewis, J, Hummel, E, Da Rocha, UN, Chakraborty, R, Bowen, BP, Karaoz, U, Cadillo-Quiroz, H, Garcia-Pichel, F, Northen, TR

Publikováno v: Nature communications, vol 6, iss 1
Baran, R; Brodie, EL; Mayberry-Lewis, J; Hummel, E; Da Rocha, UN; Chakraborty, R; et al.(2015). Exometabolite niche partitioning among sympatric soil bacteria. Nature Communications, 6. doi: 10.1038/ncomms9289. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/33c2k5jx

© 2015 Macmillan Publishers Limited. All rights reserved. Soils are arguably the most microbially diverse ecosystems. Physicochemical properties have been associated with the maintenance of this diversity. Yet, the role of microbial substrate specia

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::d2624099f2e89178aa1f821a084d354b
https://escholarship.org/uc/item/33c2k5jx

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Engineered reduction of S-adenosylmethionine alters lignin in sorghum.

Autor: Tian Y; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA., Gao Y; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA., Turumtay H; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Department of Energy System Engineering, Karadeniz Technical University, 61830, Trabzon, Turkey., Turumtay EA; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Department of Chemistry, Recep Tayyip Erdogan University, 53100, Rize, Turkey., Chai YN; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA., Choudhary H; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Department of Bioresource and Environmental Security, Sandia National Laboratories, Livermore, CA, 94550, USA., Park JH; Forage Genetics International, West Salem, WI, 54669, USA., Wu CY; Forage Genetics International, West Salem, WI, 54669, USA., De Ben CM; Department of Plant Sciences, University of California-Davis, Davis, CA, 95616, USA., Dalton J; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA., Louie KB; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Harwood T; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Chin D; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Rausser College of Natural Resources, University of California-Berkeley, Berkeley, CA, 94720, USA., Vuu KM; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA., Bowen BP; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Shih PM; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, 94720, USA., Baidoo EEK; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Northen TR; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Simmons BA; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Hutmacher R; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; University of California, Agriculture and Natural Resources, Kearney Agricultural Research and Extension Center, Parlier, CA, 93648, USA., Atim J; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; University of California, Agriculture and Natural Resources, Kearney Agricultural Research and Extension Center, Parlier, CA, 93648, USA., Putnam DH; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Department of Plant Sciences, University of California-Davis, Davis, CA, 95616, USA., Scown CD; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.; Energy & Biosciences Institute, University of California-Berkeley, Berkeley, CA, 94720, USA.; Energy Analysis and Environmental Impacts Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA., Mortimer JC; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; School of Agriculture, Food, and Wine, University of Adelaide, Glen Osmond, South Australia, Australia., Scheller HV; Joint BioEnergy Institute, Emeryville, CA, 94608, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA.; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, 94720, USA., Eudes A; Joint BioEnergy Institute, Emeryville, CA, 94608, USA. ageudes@lbl.gov.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 978R4468, Berkeley, CA, 94720, USA. ageudes@lbl.gov.

Publikováno v: Biotechnology for biofuels and bioproducts [Biotechnol Biofuels Bioprod] 2024 Oct 15; Vol. 17 (1), pp. 128. Date of Electronic Publication: 2024 Oct 15.