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of 298
pro vyhledávání: '"Boucher, Christina A."'
Portable genome sequencing technology is revolutionizing genomic research by providing a faster, more flexible method of sequencing DNA and RNA [1, 2]. The unprecedented shift from bulky stand-alone benchtop equipment confined in a laboratory setting
Externí odkaz:
http://arxiv.org/abs/2407.12001
A wavelet forest for a text $T [1..n]$ over an alphabet $\sigma$ takes $n H_0 (T) + o (n \log \sigma)$ bits of space and supports access and rank on $T$ in $O (\log \sigma)$ time. K\"arkk\"ainen and Puglisi (2011) implicitly introduced wavelet forest
Externí odkaz:
http://arxiv.org/abs/2308.07809
FM-indexes are a crucial data structure in DNA alignment, for example, but searching with them usually takes at least one random access per character in the query pattern. Ferragina and Fischer observed in 2007 that word-based indexes often use fewer
Externí odkaz:
http://arxiv.org/abs/2305.05893
Autor:
Jun, Inyoung, Marini, Simone, Boucher, Christina A., Morris, J. Glenn, Bian, Jiang, Prosperi, Mattia
Bacterial infections are responsible for high mortality worldwide. Antimicrobial resistance underlying the infection, and multifaceted patient's clinical status can hamper the correct choice of antibiotic treatment. Randomized clinical trials provide
Externí odkaz:
http://arxiv.org/abs/2207.07458
Autor:
Liu, Ting, Lee, Shinyoung, Kim, Miju, Fan, Peixin, Boughton, Raoul K., Boucher, Christina, Jeong, Kwangcheol C.
Publikováno v:
In Journal of Hazardous Materials 15 July 2024 473
Autor:
Boucher, Christina, Cenzato, Davide, Lipták, Zsuzsanna, Rossi, Massimiliano, Sciortino, Marinella
Publikováno v:
In Information and Computation June 2024 298
Whole genome sequencing (WGS) is quickly becoming the customary means for identification of antimicrobial resistance (AMR) due to its ability to obtain high resolution information about the genes and mechanisms that are causing resistance and driving
Externí odkaz:
http://arxiv.org/abs/2107.03383
Autor:
Boucher, Christina, Cenzato, Davide, Lipták, Zsuzsanna, Rossi, Massimiliano, Sciortino, Marinella
Mantaci et al. [TCS 2007] defined the eBWT to extend the definition of the BWT to a collection of strings, however, since this introduction, it has been used more generally to describe any BWT of a collection of strings and the fundamental property o
Externí odkaz:
http://arxiv.org/abs/2106.11191
Autor:
Boucher, Christina, Gagie, Travis, I, Tomohiro, Köppl, Dominik, Langmead, Ben, Manzini, Giovanni, Navarro, Gonzalo, Pacheco, Alejandro, Rossi, Massimiliano
Computing the matching statistics of patterns with respect to a text is a fundamental task in bioinformatics, but a formidable one when the text is a highly compressed genomic database. Bannai et al. gave an efficient solution for this case, which Ro
Externí odkaz:
http://arxiv.org/abs/2011.05610
Autor:
Boucher, Christina, Cvacho, Ondřej, Gagie, Travis, Holub, Jan, Manzini, Giovanni, Navarro, Gonzalo, Rossi, Massimiliano
Prefix-free parsing (PFP) was introduced by Boucher et al. (2019) as a preprocessing step to ease the computation of Burrows-Wheeler Transforms (BWTs) of genomic databases. Given a string $S$, it produces a dictionary $D$ and a parse $P$ of overlappi
Externí odkaz:
http://arxiv.org/abs/2006.11687