Author Correction: Perspectives on ENCODE (Nature, (2020), 583, 7818, (693-698), 10.1038/s41586-020-2449-8)

Autor: Abascal, FBC, Acosta, R, Addleman, NJ, Adrian, J, Afzal, V, Aken, B, Ai, R, Akiyama, JA, Jammal, OA, Amrhein, H, Anderson, SM, Dileep, V, Ding, B, Djebali, S, Dobin, A, Dominguez, D, Donaldson, S, Drenkow, J, Dreszer, TR, Snyder, MP, Drier, Y, Duff, MO, Dunn, D, Sisu, C, Eastman, C, Ecker, JR, Edwards, MD, El-Ali, N, Andrews, GR, Antoshechkin, I, Ardlie, KG, Armstrong, J, Astley, M, Banerjee, B, Barkal, AA, Barnes, IHA, Barozzi, I, Barrell, D, Barson, G, Bates, D, Baymuradov, UK, Bazile, C, Beer, MA, Beik, S, Bender, MA, Bennett, R, Bouvrette, LPB, Bernstein, BE, Berry, A, Bhaskar, A, Bignell, A, Blue, SM, Bodine, DM, Boix, C, Boley, N, Borrman, T, Borsari, B, Boyle, AP, Brandsmeier, LA, Breschi, A, Bresnick, EH, Brooks, JA, Buckley, M, Burge, CB, Byron, R, Cahill, E, Cai, L, Cao, L, Carty, M, Castanon, RG, Castillo, A, Chaib, H, Chan, ET, Chee, DR, Chee, S, Chen, H, Chen, JY, Chen, S, Cherry, JM, Chhetri, SB, Choudhary, JS, Chrast, J, Chung, D, Clarke, D, Cody, NAL, Coppola, CJ, Coursen, J, D’Ippolito, AM, Dalton, S, Danyko, C, Davidson, C, Davila-Velderrain, J, Davis, CA, Dekker, J, Deran, A, DeSalvo, G, Despacio-Reyes, G, Dewey, CN, Dickel, DE, Diegel, M, Diekhans, M

The Original Article (https://doi.org/10.1038/s41586-020-2449-8) was published on 29 July 2020. Copyright © The Authors 2022. In this Article, the authors Rizi Ai (Department of Chemistry and Biochemistry, University of California, San Diego, La Jol

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______900::1cb2b1d741b083eaf654b980b7f818c8
https://bura.brunel.ac.uk/handle/2438/26555

Perspectives on ENCODE

Autor: Snyder, MP, Gingeras, TR, Abascal, F, Acosta, R, Addleman, NJ, Adrian, J, Afzal, V, Aken, B, Akiyama, JA, Jammal, OA, Amrhein, H, Dileep, V, Ding, B, Djebali, S, Dobin, A, Dominguez, D, Sisu, C, Donaldson, S, Drenkow, J, Dreszer, TR, Drier, Y, Duff, MO, Dunn, D, Anderson, SM, Andrews, GR, Eastman, C, Ecker, JR, Edwards, MD, El-Ali, N, Elhajjajy, SI, Antoshechkin, I, Ardlie, KG, Armstrong, J, Astley, M, Banerjee, B, Barkal, AA, Barnes, IHA, Barozzi, I, Barrell, D, Barson, G, Bates, D, Baymuradov, UK, Bazile, C, Beer, MA, Beik, S, Bender, MA, Bennett, R, Bouvrette, LPB, Bernstein, BE, Berry, A, Bhaskar, A, Bignell, A, Blue, SM, Bodine, DM, Boix, C, Boley, N, Borrman, T, Borsari, B, Boyle, AP, Brandsmeier, LA, Breschi, A, Bresnick, EH, Brooks, JA, Buckley, M, Burge, CB, Byron, R, Cahill, E, Cai, L, Cao, L, Carty, M, Castanon, RG, Castillo, A, Chaib, H, Chan, ET, Chee, DR, Chee, S, Chen, H, Chen, JY, Chen, S, Cherry, JM, Chhetri, SB, Choudhary, JS, Chrast, J, Chung, D, Clarke, D, Cody, NAL, Coppola, CJ, Coursen, J, D’Ippolito, AM, Dalton, S, Danyko, C, Davidson, C, Davila-Velderrain, J, Davis, CA, Dekker, J, Deran, A, DeSalvo, G, Despacio-Reyes, G, Dewey, CN, Dickel, DE, Diegel, M, Diekhans, M

Publikováno v: Nature, vol. 583, no. 7818, pp. 693-698
Snyder, Michael P; Gingeras, Thomas R; Moore, Jill E; Weng, Zhiping; Gerstein, Mark B; Ren, Bing; Hardison, Ross C; Stamatoyannopoulos, John A; Graveley, Brenton R; Feingold, Elise A; Pazin, Michael J; Pagan, Michael; Gilchrist, Daniel A; Hitz, Benjamin C; Cherry, J Michael; Bernstein, Bradley E; Mendenhall, Eric M; Zerbino, Daniel R; Frankish, Adam; Flicek, Paul; ... (2020). Perspectives on ENCODE. Nature, 583(7818), pp. 693-698. 10.1038/s41586-020-2449-8
Nature

The Encylopedia of DNA Elements (ENCODE) Project launched in 2003 with the long-term goal of developing a comprehensive map of functional elements in the human genome. These included genes, biochemical regions associated with gene regulation (for exa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7cd9a8c3743f286c624cbe34ecbaff0
https://pubmed.ncbi.nlm.nih.gov/35474002

High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides.

Autor: Borrman T; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA., Pierce BG; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD 20850, USA.; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA., Vreven T; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA., Baker BM; Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.; Harper Cancer Research Institute, University of Notre Dame, Notre Dame, IN 46556, USA., Weng Z; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA 01605, USA.

Publikováno v: Bioinformatics (Oxford, England) [Bioinformatics] 2021 Apr 01; Vol. 36 (22-23), pp. 5377-5385.

A chromosomal connectome for psychiatric and metabolic risk variants in adult dopaminergic neurons.

Autor: Espeso-Gil S; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Halene T; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; J.J. Peters Veterans Affairs Hospital, Bronx, NY, USA., Bendl J; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Kassim B; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Ben Hutta G; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Iskhakova M; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Shokrian N; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Auluck P; Human Brain Collection Core, National Institute of Mental Health, Bethesda, MD, USA., Javidfar B; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Rajarajan P; MDPhD Program in the Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Chandrasekaran S; MDPhD Program in the Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Peter CJ; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Cote A; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Birnbaum R; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Liao W; New York Genome Center, New York, NY, 10013, USA., Borrman T; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, 01605, USA., Wiseman J; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Bell A; Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Bannon MJ; Department of Pharmacology, Wayne State University, Detroit, MI, USA., Roussos P; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; J.J. Peters Veterans Affairs Hospital, Bronx, NY, USA.; Department of Genetics and Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Crary JF; Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Weng Z; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, 01605, USA., Marenco S; Human Brain Collection Core, National Institute of Mental Health, Bethesda, MD, USA., Lipska B; Human Brain Collection Core, National Institute of Mental Health, Bethesda, MD, USA., Tsankova NM; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Department of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Huckins L; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Pamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Jiang Y; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Akbarian S; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY, USA. Schahram.akbarian@mssm.edu.; Friedman Brain Institute, Nash Family Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY, USA. Schahram.akbarian@mssm.edu.

Publikováno v: Genome medicine [Genome Med] 2020 Feb 19; Vol. 12 (1), pp. 19. Date of Electronic Publication: 2020 Feb 19.

The 3D Genome in Brain Development: An Exploration of Molecular Mechanisms and Experimental Methods.

Autor: Rahman, Samir^1,2,3,4,5 (AUTHOR) rahman.samir33@gmail.com, Roussos, Panos^{1,2,3,4,5,6,7} (AUTHOR)

Publikováno v: Neuroscience Insights. 10/29/2024, p1-15. 15p.