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Geppetto: a reusable modular open platform for exploring neuroscience data and models

Autor: Matteo, Cantarelli, Boris, Marin, Adrian, Quintana, Matt, Earnshaw, Robert, Court, Padraig, Gleeson, Salvador, Dura-Bernal, R Angus, Silver, Giovanni, Idili

Publikováno v: Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 373(1758)

Geppetto is an open-source platform that provides generic middleware infrastructure for building both online and desktop tools for visualizing neuroscience models and data and managing simulations. Geppetto underpins a number of neuroscience applicat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::427aeef356e394b43e0d0cb2a3fbe963
https://pubmed.ncbi.nlm.nih.gov/30201843

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Dynamics of a parametrically excited simple pendulum

Autor: Gabriela Depetri, Felipe A. C. Pereira, Boris Marin, José Carlos Sartorelli, Murilo S. Baptista

Publikováno v: Chaos (Woodbury, N.Y.). 28(3)

The dynamics of a parametric simple pendulum submitted to an arbitrary angle of excitation ϕ was investigated experimentally by simulations and analytically. Analytical calculations for the loci of saddle-node bifurcations corresponding to the creat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::04855e7e7ebcabdef28ec0f4c960e419
https://pubmed.ncbi.nlm.nih.gov/29604657

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Open Source Brain: a collaborative resource for visualizing, analyzing, simulating and developing standardized models of neurons and circuits

Computational models are powerful tools for investigating brain function in health and disease. However, biologically detailed neuronal and circuit models are complex and implemented in a range of specialized languages, making them inaccessible and o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b8a8c6291ff8d025174ef2a61e891a1c
https://doi.org/10.1101/229484

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26th Annual Computational Neuroscience Meeting (CNS*2017): Part 1

Autor: Thomas R. Knösche, Salvador Dura-Bernal, Sophie Rosay, Hazem Toutounji, Alexandre Hyafil, Jean-Pascal Pfister, Rodolphe Sepulchre, William W. Lytton, Eric Drebitz, Susan L. Denham, Fani Koukouli, Uwe Maskos, Alexandre Montlibert, Boris Marin, David Dahmen, Alessandro Treves, Viktor K. Jirsa, Natasha C. Gabay, Thomas Nowotny, Erik De Schutter, Hermann Cuntz, Tim Kunze, Omid Talakoub, Subutai Ahmad, Giovanni Idili, Tomas Van Pottelbergh, Sarah Goethals, Ulisse Ferrari, Daniel Durstewitz, Kevin M. Aquino, Marie Rooy, Udo Ernst, Darya V. Verveyko, Emina Ibrahimovic, Jannis Schuecker, Dmitry E. Postnov, Adrian Quintana, Ainhoa Hermoso-Mendizabal, Jens Haueisen, Marcel Nonnenmacher, Stephen D. Larson, Santiago Jaramillo, Grishma Mehta-Pandejee, Andrey Yu. Verisokin, Marcus Lewis, Spase Petkoski, Simona Olmi, Dongqi Han, Peter A. Robinson, Timothée Masquelier, Simona Cocco, Sunita Mandon, Fabrice Bartolomei, Dmitriy Lisitsyn, Alex D. Bird, Karel Ježek, Audrey Sederberg, Rémi Monasson, Milos R. Popovic, Pedro J. Gonçalves, Jakob H. Macke, Sungho Hong, X. Zhao, Romain Brette, Matt Earnshaw, David Robbe, Thierry Mora, Robert Chen, Maxime Guye, Jaime de la Rocha, Jeff Hawkins, Christophe Gardella, Iris Grothe, Matteo Cantarelli, Stephanie E. Palmer, David A. DiGregorio, Padraig Gleeson, Robert Court, Lorenzo Posani, Martin Müller, Panayiota Poirazi, R. Angus Silver, Andreas K. Kreiter, Karl J. Friston, Tushar Chauhan, Willy Wong, John D. Griffiths, Somwrita Sarkar, Olivier Marre, Sven Goedeke, Ho Ka Chan, Moritz Helias, Tanja Wernle, Boris Gutkin, Giacomo Bassetto, James MacLaurin, Yuwei Cui, Jan-Matthis Lueckmann, Pavel E. Rueda-Orozco, Benoit R. Cottereau, Robert A. McDougal, Jason N. MacLean

Publikováno v: BMC Neuroscience
BMC Neuroscience, Vol 18, Iss S1, Pp 1-14 (2017)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9ed49c39ba403907ae52dc6f771b59c4
https://doi.org/10.1186/s12868-017-0370-3

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Tilted excitation implies odd periodic resonances

Autor: Murilo S. Baptista, Gabriela Depetri, José Carlos Sartorelli, Boris Marin

Our aim is to unveil how resonances of parametric systems are affected when symmetry is broken. We showed numerically and experimentally that odd resonances indeed come about when the pendulum is excited along a tilted direction. Applying the Melniko

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3c8a9b76b95e03fd316367339019dc96

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Visualizing, editing and simulating neuronal models with the Open Source Brain 3D explorer

Autor: Padraig Gleeson, Adrian Quintana, Boris Marin, Matteo Cantarelli, R. Angus Silver

Publikováno v: BMC Neuroscience

Reproducibility, accessibility, standardization, and provenance tracking are some of the main challenges for the global scientific community today. In computational neuroscience, making models available in open and accessible formats is an important

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2510065034091508fe97a34b936a1b31
https://doi.org/10.1186/1471-2202-16-s1-p82

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Determinismo e estocasticidade em modelos de neurônios biológicos

Autor: Boris Marin

Publikováno v: Biblioteca Digital de Teses e Dissertações da USP
Universidade de São Paulo (USP)
instacron:USP

Investigou-se a gênese de atividade irregular em neurônios de centros geradores de padrões através de modelos eletrofisiologicamente realistas. Para tanto, foram adotadas abordagens paralelas. Primeiramente, desenvolveram-se técnicas para determ

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c9624a27a9bfa6e327da6fca63104475
https://doi.org/10.11606/t.43.2013.tde-23092014-154612

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