Zobrazeno 1 - 10
of 43
pro vyhledávání: '"Boris Dimitrov"'
Autor:
Senjuti Saha, Akshaya Ramesh, Katrina Kalantar, Roly Malaker, Md Hasanuzzaman, Lillian M. Khan, Madeline Y. Mayday, M. S. I. Sajib, Lucy M. Li, Charles Langelier, Hafizur Rahman, Emily D. Crawford, Cristina M. Tato, Maksuda Islam, Yun-Fang Juan, Charles de Bourcy, Boris Dimitrov, James Wang, Jennifer Tang, Jonathan Sheu, Rebecca Egger, Tiago Rodrigues De Carvalho, Michael R. Wilson, Samir K. Saha, Joseph L. DeRisi
Publikováno v:
mBio, Vol 10, Iss 6 (2019)
ABSTRACT The burden of meningitis in low-and-middle-income countries remains significant, but the infectious causes remain largely unknown, impeding institution of evidence-based treatment and prevention decisions. We conducted a validation and appli
Externí odkaz:
https://doaj.org/article/64da9386f3734a7d9f3ab1be922c9027
Autor:
Akshaya Ramesh, Sara Nakielny, Jennifer Hsu, Mary Kyohere, Oswald Byaruhanga, Charles de Bourcy, Rebecca Egger, Boris Dimitrov, Yun-Fang Juan, Jonathan Sheu, James Wang, Katrina Kalantar, Charles Langelier, Theodore Ruel, Arthur Mpimbaza, Michael R Wilson, Philip J Rosenthal, Joseph L DeRisi
Publikováno v:
PLoS ONE, Vol 14, Iss 6, p e0218318 (2019)
Febrile illness is a major burden in African children, and non-malarial causes of fever are uncertain. In this retrospective exploratory study, we used metagenomic next-generation sequencing (mNGS) to evaluate serum, nasopharyngeal, and stool specime
Externí odkaz:
https://doaj.org/article/799980bf115543789e9cd489cb6a9f98
Publikováno v:
Bioinformatics (Oxford, England), vol 39, iss 1
SummaryThe Metagenomic Intra-Species Diversity Analysis System (MIDAS) is a scalable metagenomic pipeline that identifies single nucleotide variants (SNVs) and gene copy number variants (CNVs) in microbial populations. Here, we present MIDAS2, which
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fb03df6a20e9c9e81e8898f0e4a041ea
https://doi.org/10.1093/bioinformatics/btac713
https://doi.org/10.1093/bioinformatics/btac713
Publikováno v:
Sultan Qaboos University Medical Journal [SQUMJ]. 20:e352-359
Objectives: This study aimed to review the experience with percutaneous closure of ventricular septal defects (VSDs) at the National Heart Center (NHC) in Muscat, Oman. Methods: This retrospective study was conducted from November 2008 to December 20
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::9f74ab5ad725c74c2e7a1fa37464c1e1
https://doi.org/10.18295/squmj.2020.20.04.012
https://doi.org/10.18295/squmj.2020.20.04.012
Publikováno v:
Nature biotechnology, vol 40, iss 4
Single nucleotide polymorphisms (SNPs) in metagenomics are used to quantify population structure, track strains and identify genetic determinants of microbial phenotypes. However, existing alignment-based approaches for metagenomic SNP detection requ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b467ade3247a5161c27bd3d5c1bcf9da
https://pubmed.ncbi.nlm.nih.gov/34949778
https://pubmed.ncbi.nlm.nih.gov/34949778
Autor:
Rebecca Egger, Greg Dingle, Vida Ahyong, Sreyngim Lay, James H.-C. Wang, Mark A. Zhang, Lucia V. Reynoso, Jennifer A. Bohl, Sophana Chea, Julie Han, Jonathan Sheu, Jennifer Tang, Jessica E. Manning, Katrina Kalantar, Joseph L. DeRisi, Cristina M. Tato, Andrey Kislyuk, Emily Zhong, Olivia B. Holmes, Yun-Fang Juan, Maria Mariano, Boris Dimitrov, Ryan King, David Rissato Cruz, Charles F. A. de Bourcy, Tiago Carvalho
BackgroundMetagenomic next generation sequencing (mNGS) has enabled the rapid, unbiased detection and identification of microbes without pathogen-specific reagents, culturing, or a priori knowledge of the microbial landscape. mNGS data analysis requi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b0a5d962950a691c4e240e68e008797
Autor:
Rene Sit, Aaron McGeever, Michelle Tan, David Dynerman, Amy Lyden, Charles Langelier, Cirolia G, Alen Faiz, Joseph L. DeRisi, S. Christenson, Boris Dimitrov, Ryan King, Saharai Caldera, van den Berge M, Emily D. Crawford, Jenai Quan, Kerstjens Ham
Since Next-Generation Sequencing produces reads uniformly subsampled from an input library, highly abundant sequences may mask interesting low abundance sequences. The DASH (Depleting Abundant Sequences by Hybridization) technique takes advantage of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::30b9d24af0eba9dff26ab1564640e847
This new edition draws upon the fundamentals of abrasive machining processes and the science of tribology to understand, predict, and improve abrasive machining processes. Each of the main elements of the abrasive machining system is looked at alongs
Autor:
Charles F. A. de Bourcy, Jennifer Tang, Tiago Carvalho, Boris Dimitrov, Jonathan Sheu, Charles Langelier, Hasanuzzaman, Roly Malaker, Michael R. Wilson, Katrina Kalantar, Senjuti Saha, Madeline Y. Mayday, Joseph L. DeRisi, Akshaya Ramesh, Hafizur Rahman, Cristina M. Tato, Mohammad Saiful Islam Sajib, Maksuda Islam, Emily D. Crawford, James Wang, Rebecca Egger, Lillian M. Khan, Lucy M Li, Yun-Fang Juan, Samir K. Saha
Publikováno v:
mBio, Vol 10, Iss 6, p e02877-19 (2019)
mBio, vol 10, iss 6
mBio, Vol 10, Iss 6 (2019)
mBio
mBio, vol 10, iss 6
mBio, Vol 10, Iss 6 (2019)
mBio
Globally, there are an estimated 10.6 million cases of meningitis and 288,000 deaths every year, with the vast majority occurring in low- and middle-income countries. In addition, many survivors suffer from long-term neurological sequelae. Most labor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::18289842a749172f54d88c7e97db29b4
https://doaj.org/article/201c27105d59433a8c03d51bc5f9cd7e
https://doaj.org/article/201c27105d59433a8c03d51bc5f9cd7e
Autor:
Jenai Quan, Amy Lyden, Peter S. Kim, Charles Langelier, Saharai Caldera, Katherine A. Travisano, Roly Gosling, Aaron McGeever, Emily D. Crawford, Norma Neff, Lara Pesce Ares, Carolyn S. Calfee, Joshua Batson, Joseph L. DeRisi, Peter M. Mourani, Roberto Amato, Maxwell Murphy, Bryan Greenhouse, Alison Kuchta, Adam Bennett, Davis R. Mumbengegwi, Noam Teyssier, Jordan Wilheim, Boris Dimitrov, Ryan King, Eric D. Chow, Rene Sit, Jennifer L. Smith
Publikováno v:
Nucleic acids research, vol 47, iss 14
Nucleic Acids Research
Nucleic Acids Research
The growing prevalence of deadly microbes with resistance to previously life-saving drug therapies is a dire threat to human health. Detection of low abundance pathogen sequences remains a challenge for metagenomic Next Generation Sequencing (NGS). W
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::41484aa555e71edba0752adf9e8410c5
https://escholarship.org/uc/item/5dj8h8nq
https://escholarship.org/uc/item/5dj8h8nq