Genome-wide identification and expression analysis of the SET domain-containing gene family in potato (Solanum tuberosum L.).

Autor: Suppiyar V; Institute for Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, 40225, Germany., Bonthala VS; Institute for Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, 40225, Germany. bonthala@hhu.de.; Present Address: Julius Kühn-Institut (JKI), Institute for Breeding Research On Agricultural Crops, Rudolf-Schick-Platz 3a, OT Groß Lüsewitz, Sanitz, 18190, Germany. bonthala@hhu.de., Shrestha A; Institute for Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, 40225, Germany.; Present Address: Julius Kühn-Institut (JKI), Institute for Breeding Research On Agricultural Crops, Rudolf-Schick-Platz 3a, OT Groß Lüsewitz, Sanitz, 18190, Germany., Krey S; Institute for Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, 40225, Germany.; Present Address: Julius Kühn-Institut (JKI), Institute for Breeding Research On Agricultural Crops, Rudolf-Schick-Platz 3a, OT Groß Lüsewitz, Sanitz, 18190, Germany., Stich B; Institute for Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf, 40225, Germany.; Cluster of Excellence On Plant Sciences, From Complex Traits Towards Synthetic Modules, Heinrich Heine University, Düsseldorf, 40225, Germany.; Present Address: Julius Kühn-Institut (JKI), Institute for Breeding Research On Agricultural Crops, Rudolf-Schick-Platz 3a, OT Groß Lüsewitz, Sanitz, 18190, Germany.

Publikováno v: BMC genomics [BMC Genomics] 2024 May 03; Vol. 25 (1), pp. 442. Date of Electronic Publication: 2024 May 03.

A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe.

Autor: Guerreiro R; Institute of Quantitative Genetics and Genomics of Plants, Faculty of Mathematics and Natural Sciences, Heinrich Heine University, Düsseldorf, Germany., Bonthala VS; Institute of Quantitative Genetics and Genomics of Plants, Faculty of Mathematics and Natural Sciences, Heinrich Heine University, Düsseldorf, Germany., Schlüter U; Institute of Plant Biochemistry, Faculty of Mathematics and Natural Sciences, Heinrich Heine University, Düsseldorf, Germany.; Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany., Hoang NV; Biosystematics Group, Department of Plant Sciences, Wageningen University, Wageningen, The Netherlands., Triesch S; Institute of Plant Biochemistry, Faculty of Mathematics and Natural Sciences, Heinrich Heine University, Düsseldorf, Germany.; Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany., Schranz ME; Biosystematics Group, Department of Plant Sciences, Wageningen University, Wageningen, The Netherlands., Weber APM; Institute of Plant Biochemistry, Faculty of Mathematics and Natural Sciences, Heinrich Heine University, Düsseldorf, Germany.; Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany., Stich B; Institute of Quantitative Genetics and Genomics of Plants, Faculty of Mathematics and Natural Sciences, Heinrich Heine University, Düsseldorf, Germany.; Cluster of Excellence on Plant Sciences (CEPLAS), Düsseldorf, Germany.; Max Planck Institute for Plant Breeding Research, Köln, Germany.

Publikováno v: Plant, cell & environment [Plant Cell Environ] 2023 Nov; Vol. 46 (11), pp. 3611-3627. Date of Electronic Publication: 2023 Jul 11.

The barley pan-genome reveals the hidden legacy of mutation breeding.

Autor: Jayakodi M; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany., Padmarasu S; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany., Haberer G; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany., Bonthala VS; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany., Gundlach H; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany., Monat C; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany., Lux T; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany., Kamal N; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany., Lang D; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany., Himmelbach A; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany., Ens J; Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada., Zhang XQ; Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia., Angessa TT; Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia., Zhou G; Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia.; Agriculture and Food, Department of Primary Industries and Regional Development, South Perth, Western Australia, Australia., Tan C; Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia., Hill C; Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia., Wang P; Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia., Schreiber M; The James Hutton Institute, Dundee, UK., Boston LB; HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA., Plott C; HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA., Jenkins J; HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA., Guo Y; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany., Fiebig A; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany., Budak H; Montana BioAg Inc, Missoula, MT, USA., Xu D; Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China., Zhang J; Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China., Wang C; Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China., Grimwood J; HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA., Schmutz J; HudsonAlpha, Institute for Biotechnology, Huntsville, AL, USA., Guo G; Institute of Crop Sciences, Chinese Academy of Agricultural Sciences (ICS-CAAS), Beijing, China., Zhang G; College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China., Mochida K; Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan.; Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan.; Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan., Hirayama T; Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan., Sato K; Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan., Chalmers KJ; School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, South Australia, Australia., Langridge P; School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, South Australia, Australia., Waugh R; The James Hutton Institute, Dundee, UK.; School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, South Australia, Australia.; School of Life Sciences, University of Dundee, Dundee, UK., Pozniak CJ; Department of Plant Sciences, University of Saskatchewan, Saskatoon, Saskatchewan, Canada., Scholz U; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany., Mayer KFX; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany.; School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany., Spannagl M; Plant Genome and Systems Biology (PGSB), Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany., Li C; Western Barley Genetics Alliance, State Agricultural Biotechnology Centre, College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia, Australia. C.Li@murdoch.edu.au.; Agriculture and Food, Department of Primary Industries and Regional Development, South Perth, Western Australia, Australia. C.Li@murdoch.edu.au.; Hubei Collaborative Innovation Centre for Grain Industry, Yangtze University, Jingzhou, China. C.Li@murdoch.edu.au., Mascher M; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany. mascher@ipk-gatersleben.de.; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany. mascher@ipk-gatersleben.de., Stein N; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Seeland, Germany. stein@ipk-gatersleben.de.; Center for Integrated Breeding Research (CiBreed), Georg-August-University Göttingen, Göttingen, Germany. stein@ipk-gatersleben.de.

Publikováno v: Nature [Nature] 2020 Dec; Vol. 588 (7837), pp. 284-289. Date of Electronic Publication: 2020 Nov 25.

Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis.

Autor: Bonthala VS; School of Computer Sciences, Jubilee Campus, University of Nottingham, Nottingham, United Kingdom.; School of Biosciences, University of Nottingham Malaysia Campus, Kuala Lumpur, Malaysia.; Crops For the Future, Jalan Broga, 43500 Semenyih, Malaysia., Mayes K; Plant and Crop Sciences, Biosciences, Sutton Bonington Campus, Loughborough, Leicestershire, United Kingdom., Moreton J; Advanced Data Analysis Centre, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire, United Kingdom.; School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire, United Kingdom.; Deep Seq, School of Life Sciences, University of Nottingham, Medical School, Queen's Medical Centre, Nottingham, United Kingdom., Blythe M; Deep Seq, School of Life Sciences, University of Nottingham, Medical School, Queen's Medical Centre, Nottingham, United Kingdom., Wright V; Deep Seq, School of Life Sciences, University of Nottingham, Medical School, Queen's Medical Centre, Nottingham, United Kingdom., May ST; Plant and Crop Sciences, Biosciences, Sutton Bonington Campus, Loughborough, Leicestershire, United Kingdom., Massawe F; School of Biosciences, University of Nottingham Malaysia Campus, Kuala Lumpur, Malaysia., Mayes S; Crops For the Future, Jalan Broga, 43500 Semenyih, Malaysia.; Plant and Crop Sciences, Biosciences, Sutton Bonington Campus, Loughborough, Leicestershire, United Kingdom., Twycross J; School of Computer Sciences, Jubilee Campus, University of Nottingham, Nottingham, United Kingdom.

Publikováno v: PloS one [PLoS One] 2016 Feb 09; Vol. 11 (2), pp. e0148771. Date of Electronic Publication: 2016 Feb 09 (Print Publication: 2016).

CmMDb: a versatile database for Cucumis melo microsatellite markers and other horticulture crop research.

Autor: Bhawna; National Bureau of Plant Genetic Resources, Genomics resources div., New Delhi-12, India., Chaduvula PK; National Research Center on Plant Biotechnology, Pusa campus, New Delhi-110012, India., Bonthala VS; Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad-500030, India., Manjusha V; National Bureau of Plant Genetic Resources, Genomics resources div., New Delhi-12, India., Siddiq EA; Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad-500030, India., Polumetla AK; Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad-500030, India., Prasad GM; Institute of Biotechnology, PJTSAU, Rajendra Nagar, Hyderabad-500030, India.

Publikováno v: PloS one [PLoS One] 2015 Apr 17; Vol. 10 (4), pp. e0118630. Date of Electronic Publication: 2015 Apr 17 (Print Publication: 2015).