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Referee report. For: scRepertoire: An R-based toolkit for single-cell immune receptor analysis [version 1; peer review: 1 approved with reservations]

Autor: Drufuca, Lorenzo, Bonnal, Raoul Jean Pierre, Pagani, Massimiliano

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::bc0d11d16bdd1f04f4a0b0e9285e048a

An atlas of transcribed enhancers across helper T cell diversity for decoding human diseases.

Autor: Oguchi A; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; Department of Nephrology, Graduate School of Medicine, Kyoto University, Kyoto, Japan., Suzuki A; Laboratory for Autoimmune Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Komatsu S; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; IFOM ETS - the AIRC Institute of Molecular Oncology, Milan, Italy., Yoshitomi H; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; Department of Immunology, Graduate School of Medicine, Kyoto University, Kyoto, Japan., Bhagat S; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan., Son R; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; Department of Nephrology, Graduate School of Medicine, Kyoto University, Kyoto, Japan., Bonnal RJP; IFOM ETS - the AIRC Institute of Molecular Oncology, Milan, Italy., Kojima S; Genome Immunobiology RIKEN Hakubi Research Team, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Koido M; Division of Molecular Pathology, Department of Cancer Biology, Institute of Medical Science, The University of Tokyo, Tokyo, Japan.; Laboratory of Complex Trait Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan.; Laboratory for Statistical and Translational Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Takeuchi K; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; Department of Medical Systems Genomics, Graduate School of Medicine, Kyoto University, Kyoto, Japan., Myouzen K; Laboratory for Autoimmune Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Inoue G; Laboratory for Autoimmune Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Hirai T; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Department of Gastroenterological Surgery, Yokohama City University Graduate School of Medicine, Yokohama City University, Yokohama, Japan., Sano H; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Takegami Y; K.K. DNAFORM, Yokohama, Japan., Kanemaru A; K.K. DNAFORM, Yokohama, Japan., Yamaguchi I; K.K. DNAFORM, Yokohama, Japan., Ishikawa Y; Laboratory for Statistical and Translational Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Tanaka N; Laboratory for Statistical and Translational Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Hirabayashi S; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.; Division of Precision Medicine, Kyushu University Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan., Konishi R; Inter-Organ Communication Research Team, Institute for Life and Medical Sciences, Kyoto University, Kyoto, Japan., Sekito S; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; Department of Nephro-Urologic Surgery and Andrology, Mie University Graduate School of Medicine, Mie University, Tsu, Japan., Inoue T; Department of Nephro-Urologic Surgery and Andrology, Mie University Graduate School of Medicine, Mie University, Tsu, Japan., Kere J; Department of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.; Stem Cells and Metabolism Research Program, University of Helsinki, Helsinki, Finland.; Folkhalsan Research Center, Helsinki, Finland., Takeda S; Department of Radiation Genetics, Graduate School of Medicine, Kyoto University, Kyoto, Japan.; Shenzhen University School of Medicine, Shenzhen, Guangdong, China., Takaori-Kondo A; Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University, Kyoto, Japan., Endo I; Department of Gastroenterological Surgery, Yokohama City University Graduate School of Medicine, Yokohama City University, Yokohama, Japan., Kawaoka S; Inter-Organ Communication Research Team, Institute for Life and Medical Sciences, Kyoto University, Kyoto, Japan.; Department of Integrative Bioanalytics, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan., Kawaji H; Research Center for Genome & Medical Sciences, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.; Preventive Medicine and Applied Genomics Unit, RIKEN Center for Integrative Medical Science, Yokohama, Japan.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Japan., Ishigaki K; Laboratory for Human Immunogenetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Ueno H; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; Department of Immunology, Graduate School of Medicine, Kyoto University, Kyoto, Japan., Hayashizaki Y; K.K. DNAFORM, Yokohama, Japan.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Japan., Pagani M; IFOM ETS - the AIRC Institute of Molecular Oncology, Milan, Italy.; Department of Medical Biotechnology and Translational Medicine, Università degli Studi, Milan, Italy., Carninci P; Laboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Human Technopole, Milan, Italy., Yanagita M; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; Department of Nephrology, Graduate School of Medicine, Kyoto University, Kyoto, Japan., Parrish N; Genome Immunobiology RIKEN Hakubi Research Team, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Terao C; Laboratory for Statistical and Translational Genetics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Clinical Research Center, Shizuoka General Hospital, Shizuoka, Japan.; Department of Applied Genetics, School of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Japan., Yamamoto K; Laboratory for Autoimmune Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan., Murakawa Y; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; Institute for the Advanced Study of Human Biology, Kyoto University, Kyoto, Japan.; IFOM ETS - the AIRC Institute of Molecular Oncology, Milan, Italy.; Department of Medical Systems Genomics, Graduate School of Medicine, Kyoto University, Kyoto, Japan.

Publikováno v: Science (New York, N.Y.) [Science] 2024 Jul 05; Vol. 385 (6704), pp. eadd8394. Date of Electronic Publication: 2024 Jul 05.