The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Autor: Abueg, L.A.L., Afgan, E., Allart, O., Awan, A.H., Bacon, W.A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C.J., Burke, M.L., Capon, P.K., Čech, M., Chavero-Díez, M., Chilton, J.M., Collins, T.J., Coppens, F., Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P.F., de Koning, W., Demko, M., DeSanto, A., Domínguez Begines, J.M., Doyle, M.A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M.C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A.N., Goonasekera, N.A., Goué, N., Griffin, T.J., Grüning, B.A., Guerler, A., Gundersen, S., Gustafsson, O.J.R., Hall, C., Harrop, T.W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H.-R., Hyde, C.J., Jagtap, P.D., Jakiela, J., Johnson, J.E., Joshi, J., Jossé, M., Jum'ah, Khaled, Kalaš, M., Kamieniecka, Katarzyna, Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L.S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P.A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T.M., Oba, A.J., Ostrovsky, A., Polunina, P.V., Poterlowicz, Krzysztof, Price, E.J., Price, G.R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M.T., Savchenko, V., Savchenko, D., Schatz, M.C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S.K., Suderman, K., Syme, A.E., Tangaro, M.A., Tedds, J.A., Tekman, M., Thang, W.C.M., Thanki, A.S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G.R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P., Zoabi, R.

Yes
Galaxy (https://galaxyproject.org) is deployed globally, predominantly through free-to-use services, supporting user-driven research that broadens in scope each year. Users are attracted to public Galaxy services by platform stability, tool

Externí odkaz: http://hdl.handle.net/10454/19930

Miracle Fruit Pulp Transcriptomes Identify Genetic Variants in Support of Discovery Research and Breeding

Autor: Vincent Njung’e Michael, Lynhe Demesyeux, Aureliano Bombarely, Xingbo Wu, Alan Chambers

Publikováno v: Journal of the American Society for Horticultural Science, Vol 148, Iss 5, Pp 201-208 (2023)

Miracle fruit (Synsepalum dulcificum) is the botanical source of miraculin, a natural, noncaloric sweetener. Miracle fruit plants have a bush-like architecture and produce multiple flushes of attractive red berries each year. The berries consist of a

Externí odkaz: https://doaj.org/article/64a9e564d2cb4373a1bd6f0c7e385f4e

Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective

Autor: Bombarely Aureliano, Edwards Kieron D, Sanchez-Tamburrino Juan, Mueller Lukas A

Publikováno v: BMC Genomics, Vol 13, Iss 1, p 406 (2012)

Abstract Background Polyploidization is an important mechanism in plant evolution. By analyzing the leaf transcriptomes taken from the allotetraploid Nicotiana tabacum (tobacco) and parental genome donors, N. sylvesteris (S-Genome) and N. tomentosifo

Externí odkaz: https://doaj.org/article/4f691b5be0a04b348e682e51246723f9

Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies

Autor: Muñoz-Blanco Juan, Botella Miguel A, Blanco-Portales Rosario, Medina-Escobar Nieves, Caballero José L, Cruz-Rus Eduardo, Csukasi Fabiana, Merchante Catharina, Bombarely Aureliano, Sánchez-Sevilla José F, Valpuesta Victoriano

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 503 (2010)

Abstract Background Cultivated strawberry is a hybrid octoploid species (Fragaria xananassa Duchesne ex. Rozier) whose fruit is highly appreciated due to its organoleptic properties and health benefits. Despite recent studies on the control of its gr

Externí odkaz: https://doaj.org/article/d5ec772fc32a4e5d877a3b0126b590f0

Genomics in neglected and underutilized fruit crops: A chromosome‐scale genome sequence of cherimoya (Annona cherimola)

Autor: Alicia Talavera, Noe Fernandez‐Pozo, Antonio J. Matas, Jose I. Hormaza, Aureliano Bombarely

Publikováno v: Plants, People, Planet, Vol 5, Iss 3, Pp 408-423 (2023)

Societal Impact Statement Cherimoya has been an important food source since Pre‐Columbian times in the Americas. Although it is currently considered an underutilized fruit crop, it is still important at the local level in several regions of Central

Externí odkaz: https://doaj.org/article/fb13fdb0b9c842fe8558740232dba175