Bacteroides vesicles promote functional alterations in the gut microbiota composition.

Autor: Shagaleeva OY; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Kashatnikova DA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.; The Laboratory of Ecological Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia., Kardonsky DA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Efimov BA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.; Department of Microbiology and Virology, Pirogov Russian National Research Medical University, Moscow, Russia., Ivanov VA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Smirnova SV; The Laboratory of Ecological Genetics, Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia., Evsiev SS; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Zubkov EA; Department of Basic and Applied Neurobiology, V. P. Serbsky National Medical Research Center for Psychiatry and Narcology, Moscow, Russia., Abramova OV; Department of Basic and Applied Neurobiology, V. P. Serbsky National Medical Research Center for Psychiatry and Narcology, Moscow, Russia., Zorkina YA; Department of Basic and Applied Neurobiology, V. P. Serbsky National Medical Research Center for Psychiatry and Narcology, Moscow, Russia., Morozova AY; Department of Basic and Applied Neurobiology, V. P. Serbsky National Medical Research Center for Psychiatry and Narcology, Moscow, Russia., Vorobeva EA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Silantiev AS; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Kolesnikova IV; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Markelova MI; Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, Russia., Olekhnovich EI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Morozov MD; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Zoruk PY; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Boldyreva DI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Kazakova VD; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Vanyushkina AA; Vladimir Zelman Center for Neurobiology and Brain Rehabilitation, Skolkovo Institute of Science and Technology, Moscow, Russia., Chaplin AV; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.; Department of Microbiology and Virology, Pirogov Russian National Research Medical University, Moscow, Russia., Grigoryeva TV; Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kazan, Russia., Zakharzhevskaya NB; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2024 Nov 05; Vol. 12 (11), pp. e0063624. Date of Electronic Publication: 2024 Sep 30.

A hybrid pathway for self-sustained luminescence.

Autor: Palkina KA; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Karataeva TA; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Perfilov MM; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Fakhranurova LI; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Markina NM; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Somermeyer LG; Institute of Science and Technology Austria, 3400 Klosterneuburg, Austria., Garcia-Perez E; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universitat Politècnica de Valéncia, 46022 Valencia, Spain., Vazquez-Vilar M; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universitat Politècnica de Valéncia, 46022 Valencia, Spain., Rodriguez-Rodriguez M; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universitat Politècnica de Valéncia, 46022 Valencia, Spain., Vazquez-Vilriales V; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universitat Politècnica de Valéncia, 46022 Valencia, Spain., Shakhova ES; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Mitiouchkina T; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Belozerova OA; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Kovalchuk SI; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Alekberova A; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Malyshevskaia AK; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Bugaeva EN; Planta LLC, 121205 Moscow, Russia., Guglya EB; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.; Pirogov Russian National Research Medical University, Ostrovityanova 1, Moscow 117997, Russia., Balakireva A; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Sytov N; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Bezlikhotnova A; Planta LLC, 121205 Moscow, Russia., Boldyreva DI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Babenko VV; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Kondrashov FA; Okinawa Institute of Science and Technology Graduate University, Okinawa 904-0412, Japan., Choob VV; Botanical Garden of Lomonosov Moscow State University, Vorobievy Gory 1 b.12, Moscow 119234 Russia., Orzaez D; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas (CSIC), Universitat Politècnica de Valéncia, 46022 Valencia, Spain., Yampolsky IV; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.; Pirogov Russian National Research Medical University, Ostrovityanova 1, Moscow 117997, Russia.; Light Bio Inc., Ketchum, ID, USA., Mishin AS; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia., Sarkisyan KS; Planta LLC, 121205 Moscow, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 117997 Moscow, Russia.; Light Bio Inc., Ketchum, ID, USA.; Synthetic Biology Group, MRC Laboratory of Medical Sciences, London, UK.; Institute of Clinical Sciences, Faculty of Medicine and Imperial College Centre for Synthetic Biology, Imperial College London, London, UK.

Publikováno v: Science advances [Sci Adv] 2024 Mar 08; Vol. 10 (10), pp. eadk1992. Date of Electronic Publication: 2024 Mar 08.

An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform.

Autor: Larin AK; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia. zelaz@yandex.ru., Klimina KM; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Veselovsky VA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Olekhnovich EI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Morozov MD; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Boldyreva DI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Yunes RA; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Manolov AI; Research Institute for Systems Biology and Medicine, Moscow, Russia., Fedorov DE; Research Institute for Systems Biology and Medicine, Moscow, Russia., Pavlenko AV; Research Institute for Systems Biology and Medicine, Moscow, Russia., Galeeva YS; Research Institute for Systems Biology and Medicine, Moscow, Russia., Starikova EV; Research Institute for Systems Biology and Medicine, Moscow, Russia., Ilina EN; Research Institute for Systems Biology and Medicine, Moscow, Russia.

Publikováno v: BMC genomic data [BMC Genom Data] 2024 Jan 22; Vol. 25 (1), pp. 8. Date of Electronic Publication: 2024 Jan 22.

To the Origin of Fungi: Analysis of MFS Transporters of First Assembled Aphelidium Genome Highlights Dissimilarity of Osmotrophic Abilities between Aphelida and Fungi.

Autor: Pozdnyakov IR; Zoological Institute, Russian Academy of Sciences, St. Petersburg 199034, Russia., Potapenko EV; Institute of Evolution, University of Haifa, Haifa 3498838, Israel.; Department of Evolutionary and Environmental Biology, University of Haifa, Haifa 3498838, Israel., Nassonova ES; Laboratory of Cytology of Unicellular Organisms, Institute of Cytology, Russian Academy of Sciences, St. Petersburg 194064, Russia.; Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg University, St. Petersburg 199034, Russia., Babenko VV; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow 119435, Russia., Boldyreva DI; Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow 119435, Russia., Tcvetkova VS; Department of Invertebrate Zoology, Faculty of Biology, St. Petersburg University, St. Petersburg 199034, Russia., Karpov SA; Zoological Institute, Russian Academy of Sciences, St. Petersburg 199034, Russia.

Publikováno v: Journal of fungi (Basel, Switzerland) [J Fungi (Basel)] 2023 Oct 16; Vol. 9 (10). Date of Electronic Publication: 2023 Oct 16.

Sharp water column stratification with an extremely dense microbial population in a small meromictic lake, Trekhtzvetnoe.

Autor: Savvichev AS; Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow, Russia., Babenko VV; Federal Medical Biological Agency, Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russia., Lunina ON; Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow, Russia., Letarova MA; Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow, Russia., Boldyreva DI; Federal Medical Biological Agency, Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russia.; Moscow Institute of Physics and Technology, Moscow, Russia., Veslopolova EF; Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow, Russia., Demidenko NA; Zubov State Oceanographic Institute (ZSOI), Moscow, Russia., Kokryatskaya NM; Federal Research Centre for Integrated Studies of the Arctic, Arkhangelsk, 163000, Russia., Krasnova ED; Nikolay Pertsov White Sea Biological Station, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia., Gaisin VA; Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow, Russia., Kostryukova ES; Federal Medical Biological Agency, Federal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russia.; Moscow Institute of Physics and Technology, Moscow, Russia., Gorlenko VM; Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow, Russia., Letarov AV; Winogradsky Institute of Microbiology, Research Centre of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.; Moscow Institute of Physics and Technology, Moscow, Russia.; Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.

Publikováno v: Environmental microbiology [Environ Microbiol] 2018 Oct; Vol. 20 (10), pp. 3784-3797. Date of Electronic Publication: 2018 Oct 05.