CRISPR-Cas guide RNA indel analysis using CRISPResso2 with Nanopore sequencing data.

Autor: McFarlane GR; NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, 2568, Australia. gus.mcfarlane@dpi.nsw.gov.au., Polanco JVC; Sydney School of Veterinary Science, Faculty of Science, The University of Sydney, Camden, NSW, Australia.; Catalina Stud, North Richmond, NSW, Australia., Bogema D; NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW, 2568, Australia.

Publikováno v: BMC research notes [BMC Res Notes] 2024 Jul 26; Vol. 17 (1), pp. 205. Date of Electronic Publication: 2024 Jul 26.

Molecular characterisation of the Australian and New Zealand livestock Chlamydia pecorum strains confirms novel but clonal ST23 in association with ovine foetal loss.

Autor: Jelocnik M; University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, Queensland 4557, Australia. Electronic address: mjelocni@usc.edu.au., White RT; University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, Queensland 4557, Australia; The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Infectious Disease Research Centre, Brisbane, Queensland 4072, Australia; The University of Queensland, Australian Centre for Ecogenomics, Brisbane, Queensland 4072, Australia. Electronic address: rhys.white@uq.edu.au., Clune T; Murdoch University, Centre for Animal Production and Health, Perth, Western Australia 6150, Australia. Electronic address: t.clune@murdoch.edu.au., O'Connell J; Ministry for Primary Industries, Diagnostic and Surveillance Services Directorate, Upper Hutt 5140, New Zealand. Electronic address: john.o'connell@mpi.govt.nz., Foxwell J; Animal Health Laboratory, Ministry for Primary Industries, 66 Ward Street, Upper Hutt 5018, New Zealand. Electronic address: jonathan.foxwell@mpi.govt.nz., Hair S; Department of Primary Industries and Regional Development, South Perth, WA 6151, Australia. Electronic address: sam.hair@dpird.wa.gov.au., Besier S; Department of Primary Industries and Regional Development, South Perth, WA 6151, Australia. Electronic address: shane.besier@dpird.wa.gov.au., Tom; Murdoch University, Centre for Animal Production and Health, Perth, Western Australia 6150, Australia. Electronic address: t.la@murdoch.edu.au., Phillips N; Murdoch University, Centre for Animal Production and Health, Perth, Western Australia 6150, Australia. Electronic address: n.phillips@murdoch.edu.au., Robbins A; University of the Sunshine Coast, Centre for Bioinnovation, Sippy Downs, Sunshine Coast, Queensland 4557, Australia. Electronic address: amy.robbins@uqconnect.edu.au., Bogema D; NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia. Electronic address: daniel.bogema@dpi.nsw.gov.au., Vaz PK; The University of Melbourne, Melbourne Veterinary School, Asia Pacific Centre for Animal Health, Parkville, Victoria 3010, Australia. Electronic address: pvaz@unimelb.edu.au., Legione AR; The University of Melbourne, Melbourne Veterinary School, Asia Pacific Centre for Animal Health, Parkville, Victoria 3010, Australia. Electronic address: legionea@unimelb.edu.au., Jenkins C; NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, New South Wales 2568, Australia. Electronic address: cheryl.jenkins@dpi.nsw.gov.au., Jacobson C; Murdoch University, Centre for Animal Production and Health, Perth, Western Australia 6150, Australia. Electronic address: c.jacobson@murdoch.edu.au.

Publikováno v: Veterinary microbiology [Vet Microbiol] 2023 Aug; Vol. 283, pp. 109774. Date of Electronic Publication: 2023 May 10.

Comparative Genomics of Xanthomonas citri pv. citri A* Pathotype Reveals Three Distinct Clades with Varying Plasmid Distribution

Autor: Webster J, Bogema D, Chapman TA

Citrus bacterial canker (CBC) is an important disease of citrus cultivars worldwide that causes blister-like lesions on host plants and leads to more severe symptoms such as plant defoliation and premature fruit drop. The causative agent, Xanthomonas

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______363::1a22a15f9d0375cb8399477d2cc85944
https://hdl.handle.net/10453/146226

Bioconda: sustainable and comprehensive software distribution for the life sciences

Autor: Dale R., Gruning B., Sjodin A., Rowe J., Chapman B. A., Tomkins-Tinch C. H., Valieris R., Batut B., Caprez A., Cokelaer T., Yusuf D., Beauchamp K. A., Brinda K., Wollmann T., Corguille G. L., Ryan D., Bretaudeau A., Hoogstrate Y., Pedersen B. S., Heeringen S., Raden M., Luna-Valero S., Soranzo N., Smet M. D., Kuster G. V., Kirchner R., Pantano L., Charlop-Powers Z., Thornton K., Martin M., Beek M. D., Maticzka D., Miladi M., Will S., Gravouil K., Unneberg P., Brueffer C., Blank C., Piro V. C., Wolff J., Antao T., Gladman S., Shlyakhter I., Hollander M., Mabon P., Shen W., Boekel J., Holtgrewe M., Bouvier D., de Ruiter J. R., Cabral J., Choudhary S., Harding N., Kleinkauf R., Enns E., Eggenhofer F., Brown J., Cock P. J. A., Timm H., Thomas C., Zhang X. -O., Chambers M., Turaga N., Seiler E., Brislawn C., Pruesse E., Fallmann J., Kelleher J., Nguyen H., Parsons L., Fang Z., Stovner E. B., Stoler N., Ye S., Wohlers I., Farouni R., Freeberg M., Johnson J. E., Bargull M., Kensche P. R., Webster T. H., Eppley J. M., Stahl C., Rose A. S., Reynolds A., Wang L. -B., Garnier X., Dirmeier S., Knudsen M., Taylor J., Srivastava A., Rai V., Agren R., Junge A., Guimera R. V., Khan A., Schmeier S., He G., Pinello L., Hagglund E., Mikheyev A. S., Preussner J., Waters N. R., Li W., Capellades J., Chande A. T., Pirola Y., Hiltemann S., Bendall M. L., Singh S., Dunn W. A., Drouin A., Domenico T. D., Bruijn I., Larson D. E., Chicco D., Grassi E., Gonnella G., B J., Wang L., Giacomoni F., Clarke E., Blankenberg D., Tran C., Patro R., Laurent S., Gopez M., Sennblad B., Baaijens J. A., Ewels P., Wright P. R., Enache O. M., Roger P., Dampier W., Koppstein D., Devisetty U. K., Rausch T., Cornwell M., Salatino A. E., Seiler J., Jung M., Kornobis E., Cumbo F., Stocker B. K., Moskalenko O., Bogema D. R., Workentine M. L., Newhouse S. J., Leprevost F. D. V., Arvai K., Koster J.

Publikováno v: Nature Methods
Nature Methods, Nature Publishing Group, 2018, 15 (7), pp.475-476. ⟨10.1038/s41592-018-0046-7⟩
Nature Methods, Nature Publishing Group, 2018, 15 (7), pp.475-476
Nature Methods, 2018, 15 (7), pp.475-476. ⟨10.1038/s41592-018-0046-7⟩
Nature Methods, 15(7), 475-476. Nature Publishing Group

International audience; We present Bioconda (https://bioconda.github.io), a distribution of bioinformatics software for the lightweight, multi- platform and language-agnostic package manager Conda. Currently, Bioconda o ers a collection of over 3000

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::183f2a9d867a8a3bf8cb7ac58bc6740e
https://hal-pasteur.archives-ouvertes.fr/pasteur-02926292

Chlamydia pecorum Ovine Abortion: Associations between Maternal Infection and Perinatal Mortality.

Autor: Jenkins C; Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Menangle, NSW 2568, Australia., Jelocnik M; Genecology Research Centre, University of the Sunshine Coast, Sippy Downs, QLD 4557, Australia., Onizawa E; Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Menangle, NSW 2568, Australia., McNally J; North West Local Land Services, Moree, NSW 2400, Australia., Coilparampil R; Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Menangle, NSW 2568, Australia., Pinczowski P; Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Menangle, NSW 2568, Australia., Bogema D; Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Menangle, NSW 2568, Australia., Westermann T; Elizabeth Macarthur Agricultural Institute, NSW Department of Primary Industries, Menangle, NSW 2568, Australia.; Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14850, USA.

Publikováno v: Pathogens (Basel, Switzerland) [Pathogens] 2021 Oct 22; Vol. 10 (11). Date of Electronic Publication: 2021 Oct 22.