Zobrazeno 1 - 10
of 167
pro vyhledávání: '"Blinov, Michael L."'
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Autor:
Shaikh, Bilal, Smith, Lucian P., Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S., Anwar, Azraf, Beber, Moritz E., Bergmann, Frank T., Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G. Bard, Faeder, James R., Freiburger, Andrew P., Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H., Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hellerstein, Joseph L., Hoops, Stefan, Ison, Jon C., Jahn, Diego, Jakubowski, Henry V., Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Mandal, Synchon, McDougal, Robert, Medley, J. Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J., Naldi, Aurelien, Nguyen, Tung V. N., Nickerson, David P., Olivier, Brett G., Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R., Priya, Ankita, Rampadarath, Anand K., Rohwer, Johann M., Saglam, Ali S., Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J., van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P., Blinov, Michael L., Sauro, Herbert M., Moraru, Ion I., Karr, Jonathan R.
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, because the numerous formats and methods for simulating various subsystems
Externí odkaz:
http://arxiv.org/abs/2203.06732
Autor:
Shaikh, Bilal, Freiburger, Andrew Philip, König, Matthias, Bergmann, Frank T., Nickerson, David P., Sauro, Herbert M., Blinov, Michael L., Smith, Lucian P., Moraru, Ion I., Karr, Jonathan R.
Summary: More sophisticated models are needed to address problems in bioscience, synthetic biology, and precision medicine. To help facilitate the collaboration needed for such models, the community developed the Simulation Experiment Description Mar
Externí odkaz:
http://arxiv.org/abs/2106.00844
Autor:
Blinov, Michael L., Gennari, John H., Karr, Jonathan R., Moraru, Ion I., Nickerson, David P., Sauro, Herbert M.
Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in domains such as systems biology where there have been extensive stand
Externí odkaz:
http://arxiv.org/abs/2104.04604
Akademický článek
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Akademický článek
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Autor:
Waltemath Dagmar, Golebiewski Martin, Blinov Michael L, Gleeson Padraig, Hermjakob Henning, Hucka Michael, Inau Esther Thea, Keating Sarah M, König Matthias, Krebs Olga, Malik-Sheriff Rahuman S, Nickerson David, Oberortner Ernst, Sauro Herbert M, Schreiber Falk, Smith Lucian, Stefan Melanie I, Wittig Ulrike, Myers Chris J
Publikováno v:
Journal of Integrative Bioinformatics, Vol 17, Iss 2-3, Pp 19-895 (2020)
This paper presents a report on outcomes of the 10th Computational Modeling in Biology Network (COMBINE) meeting that was held in Heidelberg, Germany, in July of 2019. The annual event brings together researchers, biocurators and software engineers t
Externí odkaz:
https://doaj.org/article/3095111417c745328ed4dceb6bee80ef
The activities and interactions of proteins that govern the cellular response to a signal generate a multitude of protein phosphorylation states and heterogeneous protein complexes. Here, using a computational model that accounts for 307 molecular sp
Externí odkaz:
http://arxiv.org/abs/q-bio/0411021
Akademický článek
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Autor:
Zhang Fengkai, Smith Lucian P., Blinov Michael L., Faeder James, Hlavacek William S., Juan Tapia Jose, Keating Sarah M., Rodriguez Nicolas, Dräger Andreas, Harris Leonard A., Finney Andrew, Hu Bin, Hucka Michael, Meier-Schellersheim Martin
Publikováno v:
Journal of Integrative Bioinformatics, Vol 17, Iss 2-3 (2020)
Rule-based modeling is an approach that permits constructing reaction networks based on the specification of rules for molecular interactions and transformations. These rules can encompass details such as the interacting sub-molecular domains and the
Externí odkaz:
https://doaj.org/article/d421821be04f470bbb1e01bec3b7f69d
Autor:
Bergmann Frank T., Czauderna Tobias, Dogrusoz Ugur, Rougny Adrien, Dräger Andreas, Touré Vasundra, Mazein Alexander, Blinov Michael L., Luna Augustin
Publikováno v:
Journal of Integrative Bioinformatics, Vol 17, Iss 2-3 (2020)
This document defines Version 0.3 Markup Language (ML) support for the Systems Biology Graphical Notation (SBGN), a set of three complementary visual languages developed for biochemists, modelers, and computer scientists. SBGN aims at representing ne
Externí odkaz:
https://doaj.org/article/f62318a5df25471a98b3f21d09eb1c76