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pro vyhledávání: '"Blaise Weber"'
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize
Autor:
Rurika Oka, Johan Zicola, Blaise Weber, Sarah N. Anderson, Charlie Hodgman, Jonathan I. Gent, Jan-Jaap Wesselink, Nathan M. Springer, Huub C. J. Hoefsloot, Franziska Turck, Maike Stam
Publikováno v:
Genome Biology, Vol 18, Iss 1, Pp 1-24 (2017)
Abstract Background While most cells in multicellular organisms carry the same genetic information, in each cell type only a subset of genes is being transcribed. Such differentiation in gene expression depends, for a large part, on the activation an
Externí odkaz:
https://doaj.org/article/05a74aef4965426fbace5cc950a13ca5
Publikováno v:
Journal of bioinformatics and computational biology, 18(1):2050001. World Scientific Publishing Co. Pte. Ltd.
The circular chromosome conformation capture technique followed by sequencing (4C-seq) has been used in a number of studies to investigate chromosomal interactions between DNA fragments. Computational pipelines have been developed and published that
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e8375dbd9d3c6c4043d402884b499d7
https://dare.uva.nl/personal/pure/en/publications/analysis-of-4cseq-data-a-comparison-of-methods(6a9a0c20-a218-4fd4-b3e7-86683638c6ee).html
https://dare.uva.nl/personal/pure/en/publications/analysis-of-4cseq-data-a-comparison-of-methods(6a9a0c20-a218-4fd4-b3e7-86683638c6ee).html
Autor:
Mariliis Tark-Dame, Rechien Bader, Damar Tri Anggoro, Aimee Walmsley, Rurika Oka, Mara de Sain, Maike Stam, Blaise Weber
Publikováno v:
Journal of Visualized Experiments, 133:e57295. MYJoVE Corporation
When generating transgenic plants, generally the objective is to have stable expression of a transgene. This requires a single, intact integration of the transgene, as multi-copy integrations are often subjected to gene silencing. The Gateway-compati
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1675
With Chromosome Conformation Capture (3C), the relative interaction frequency of one chromosomal fragment with another can be determined. The technique is especially suited for unraveling the 3D organization of specific loci when focusing on aspects
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize
Autor:
Blaise Weber, Johan Zicola, Nathan M. Springer, Rurika Oka, Jan-Jaap Wesselink, Maike Stam, Sarah N. Anderson, Huub C. J. Hoefsloot, Jonathan I. Gent, Charlie Hodgman, Franziska Turck
Publikováno v:
Genome Biology, 18:137. BioMed Central
Genome Biology, Vol 18, Iss 1, Pp 1-24 (2017)
Genome Biology
Genome Biology, Vol 18, Iss 1, Pp 1-24 (2017)
Genome Biology
Background While most cells in multicellular organisms carry the same genetic information, in each cell type only a subset of genes is being transcribed. Such differentiation in gene expression depends, for a large part, on the activation and repress
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a4eb297fdc2f5e20ba117398c458456d
https://dare.uva.nl/personal/pure/en/publications/genomewide-mapping-of-transcriptional-enhancer-candidates-using-dna-and-chromatin-features-in-maize(291bceba-1b76-4863-a570-02d80714652f).html
https://dare.uva.nl/personal/pure/en/publications/genomewide-mapping-of-transcriptional-enhancer-candidates-using-dna-and-chromatin-features-in-maize(291bceba-1b76-4863-a570-02d80714652f).html
Publikováno v:
Trends in Plant Science, 21(11), 974-987. Elsevier
Higher eukaryotes typically contain many different cell types, displaying different cellular functions that are influenced by biotic and abiotic cues. The different functions are characterized by specific gene expression patterns mediated by regulato