Zobrazeno 1 - 10
of 64
pro vyhledávání: '"Bjørn Panyella Pedersen"'
Autor:
Rune Thomas Kidmose, Jonathan Juhl, Poul Nissen, Thomas Boesen, Jesper Lykkegaard Karlsen, Bjørn Panyella Pedersen
Publikováno v:
IUCrJ, Vol 6, Iss 4, Pp 526-531 (2019)
Model building into experimental maps is a key element of structural biology, but can be both time consuming and error prone for low-resolution maps. Here we present Namdinator, an easy-to-use tool that enables the user to run a molecular dynamics fl
Externí odkaz:
https://doaj.org/article/62db1750502545a0b799c66a35dc5325
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-8 (2019)
Plants are dependent on controlled sugar uptake via Monosaccharide Transporters, such as STP10, for correct organ development, sugar accumulation in fruits and microbial defense. Here authors present the crystal structure of STP10 bound to glucose wh
Externí odkaz:
https://doaj.org/article/ec0f3d5b002246699810933c73970994
Autor:
Laust Bavnhøj, Jan Heiner Driller, Lorena Zuzic, Amanda Dyrholm Stange, Birgit Schiøtt, Bjørn Panyella Pedersen
Publikováno v:
Nature Plants.
Sucrose import from photosynthetic tissues into the phloem is mediated by transporters from the low-affinity sucrose transporter family (SUC/SUT family). Furthermore, sucrose redistribution to other tissues is driven by phloem sap movement, the produ
Publikováno v:
Andersen, C G, Bavnhøj, L & Pedersen, B P 2023, ' May the proton motive force be with you : A plant transporter review ', Current Opinion in Structural Biology, vol. 79, 102535 . https://doi.org/10.1016/j.sbi.2023.102535
As our ecosystems experience challenges associated with climate change, an improved understanding of the fundamental biochemical processes governing plant physiology is needed. Strikingly, current structural information on plant membrane transporters
Autor:
Mikael B. L. Winkler, Lynette Nel, Kelly M. Frain, Emil Dedic, Esben Olesen, Bjørn Panyella Pedersen
Publikováno v:
Winkler, M B L, Nel, L, Frain, K M, Dedic, E, Olesen, E & Pedersen, B P 2022, ' Sterol uptake by the NPC system in eukaryotes : a Saccharomyces cerevisiae perspective ', FEBS Letters, vol. 596, no. 2, pp. 160-179 . https://doi.org/10.1002/1873-3468.14253
Sterols are an essential component of membranes in all eukaryotic cells and the precursor of multiple indispensable cellular metabolites. After endocytotic uptake, sterols are integrated into the lysosomal membrane by the Niemann-Pick type C (NPC) sy
Autor:
Casper Larsen, Michael Schlame, David L. Stokes, Marie E. Sweet, Bjørn Panyella Pedersen, Xihui Zhang
Publikováno v:
Proc Natl Acad Sci U S A
Sweet, M E, Larsen, C, Zhang, X, Schlame, M, Pedersen, B P & Stokes, D L 2021, ' Structural basis for potassium transport in prokaryotes by KdpFABC ', Proceedings of the National Academy of Sciences of the United States of America, vol. 118, no. 29, e2105195118 . https://doi.org/10.1073/pnas.2105195118
Sweet, M E, Larsen, C, Zhang, X, Schlame, M, Pedersen, B P & Stokes, D L 2021, ' Structural basis for potassium transport in prokaryotes by KdpFABC ', Proceedings of the National Academy of Sciences of the United States of America, vol. 118, no. 29, e2105195118 . https://doi.org/10.1073/pnas.2105195118
KdpFABC is an oligomeric K+ transport complex in prokaryotes that maintains ionic homeostasis under stress conditions. The complex comprises a channel-like subunit (KdpA) from the superfamily of K+ transporters and a pump-like subunit (KdpB) from the
Autor:
Poul Nissen, Jonathan Juhl, Rune T. Kidmose, Thomas Boesen, Bjørn Panyella Pedersen, Jesper Lykkegaard Karlsen
Publikováno v:
IUCrJ, Vol 6, Iss 4, Pp 526-531 (2019)
IUCrJ
Kidmose, R T, Juhl, J, Nissen, P, Boesen, T, Karlsen, J L & Pedersen, B P 2019, ' Namdinator-Automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps ', IUCrJ, vol. 6, no. 4, pp. 526-531 . https://doi.org/10.1107/S2052252519007619
IUCrJ
Kidmose, R T, Juhl, J, Nissen, P, Boesen, T, Karlsen, J L & Pedersen, B P 2019, ' Namdinator-Automatic molecular dynamics flexible fitting of structural models into cryo-EM and crystallography experimental maps ', IUCrJ, vol. 6, no. 4, pp. 526-531 . https://doi.org/10.1107/S2052252519007619
A pipeline tool called Namdinator is presented that enables the user to run a molecular dynamics flexible fitting (MDFF) simulation in a fully automated manner, online or locally. This provides a fast and easy way to create suitable initial models fo
Autor:
Xihui Zhang, Marie E. Sweet, David L. Stokes, Bjørn Panyella Pedersen, Michael Schlame, Casper Larsen
KdpFABC is an oligomeric K+ transport complex in prokaryotes that maintains ionic homeostasis under stress conditions. The complex comprises a channel-like subunit (KdpA) from the Superfamily of K+ Transporters and a pump-like subunit (KdpB) from the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8d87b28c9f1f7f11dc95df6197a40941
https://doi.org/10.1101/2021.01.09.426067
https://doi.org/10.1101/2021.01.09.426067
Autor:
Jose C. Flores-Canales, Laust Bavnhøj, Bjørn Panyella Pedersen, Peter Aasted Paulsen, Birgit Schiøtt
Publikováno v:
Bavnhøj, L, Paulsen, P A, Flores-Canales, J C, Schiøtt, B & Pedersen, B P 2021, ' Molecular mechanism of sugar transport in plants unveiled by structures of glucose/H + symporter STP10 ', Nature Plants, vol. 7, no. 10, pp. 1409-1419 . https://doi.org/10.1038/s41477-021-00992-0
Nature plants 7(10), 1409-1419 (2021). doi:10.1038/s41477-021-00992-0
Nature plants 7(10), 1409-1419 (2021). doi:10.1038/s41477-021-00992-0
Nature plants 7(10), 1409 - 1419 (2021). doi:10.1038/s41477-021-00992-0
Sugars are essential sources of energy and carbon and also function as key signalling molecules in plants. Sugar transport proteins (STP) are proton-coupled symporters respo
Sugars are essential sources of energy and carbon and also function as key signalling molecules in plants. Sugar transport proteins (STP) are proton-coupled symporters respo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b07e54deda89c6e08d110897279752d3
Structural comparison of GLUT1 to GLUT3 reveal transport regulation mechanism in sugar porter family
Publikováno v:
Custódio, T F, Paulsen, P A, Frain, K M & Pedersen, B P 2021, ' Structural comparison of GLUT1 to GLUT3 reveal transport regulation mechanism in sugar porter family ', Life science alliance, vol. 4, no. 4, e202000858 . https://doi.org/10.26508/LSA.202000858
Life Science Alliance
Custódio, T F, Paulsen, P A, Frain, K M & Pedersen, B P 2021, ' Structural comparison of GLUT1 to GLUT3 reveal transport regulation mechanism in sugar porter family ', Life science alliance, vol. 4, no. 4, e202000858 . https://doi.org/10.26508/lsa.202000858
Life science alliance 4(4), e202000858-(2021). doi:10.26508/lsa.202000858
Life Science Alliance
Custódio, T F, Paulsen, P A, Frain, K M & Pedersen, B P 2021, ' Structural comparison of GLUT1 to GLUT3 reveal transport regulation mechanism in sugar porter family ', Life science alliance, vol. 4, no. 4, e202000858 . https://doi.org/10.26508/lsa.202000858
Life science alliance 4(4), e202000858-(2021). doi:10.26508/lsa.202000858
Life science alliance 4(4), e202000858 - (2021). doi:10.26508/lsa.202000858
The human glucose transporters GLUT1 and GLUT3 have a central role in glucose uptake as canonical members of the Sugar Porter (SP) family. GLUT1 and GLUT3 share a fully
The human glucose transporters GLUT1 and GLUT3 have a central role in glucose uptake as canonical members of the Sugar Porter (SP) family. GLUT1 and GLUT3 share a fully
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f53753762c3c9712d626f126119100ad