From volume electron microscopy datasets to segmentation models, feature quantification, and data reuse

Autor: Belevich Ilya, Czymmek Kirk, Bischof Johanna, Mathur Aastha, Collinson Lucy, Jokitalo Eija

Publikováno v: BIO Web of Conferences, Vol 129, p 10044 (2024)

Externí odkaz: https://doaj.org/article/a96efb5d030949f49a5247cf518c619e

Community-developed checklists for publishing images and image analysis

Autor: Schmied, Christopher, Nelson, Michael, Avilov, Sergiy, Bakker, Gert-Jan, Bertocchi, Cristina, Bischof, Johanna, Boehm, Ulrike, Brocher, Jan, Carvalho, Mariana, Chiritescu, Catalin, Christopher, Jana, Cimini, Beth, Conde-Sousa, Eduardo, Ebner, Michael, Ecker, Rupert, Eliceiri, Kevin, Fernandez-Rodriguez, Julia, Gaudreault, Nathalie, Gelman, Laurent, Grunwald, David, Gu, Tingting, Halidi, Nadia, Hammer, Mathias, Hartley, Matthew, Held, Marie, Jug, Florian, Kapoor, Varun, Koksoy, Ayse Aslihan, Lacoste, Judith, Dévédec, Sylvia Le, Guyader, Sylvie Le, Liu, Penghuan, Martins, Gabriel, Mathur, Aastha, Miura, Kota, Llopis, Paula Montero, Nitschke, Roland, North, Alison, Parslow, Adam, Payne-Dwyer, Alex, Plantard, Laure, Rizwan, Ali, Schroth-Diez, Britta, Schütz, Lucas, Scott, Ryan T., Seitz, Arne, Selchow, Olaf, Sharma, Ved, Spitaler, Martin, Srinivasan, Sathya, De Castillia, Caterina Strambio, Taatjes, Douglas, Tischer, Christian, Jambor, Helena Klara

Images document scientific discoveries and are prevalent in modern biomedical research. Microscopy imaging in particular is currently undergoing rapid technological advancements. However for scientists wishing to publish the obtained images and image

Externí odkaz: http://arxiv.org/abs/2302.07005

QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Autor: Nelson, Glyn, Boehm, Ulrike, Bagley, Steve, Bajcsy, Peter, Bischof, Johanna, Brown, Claire M, Dauphin, Aurelien, Dobbie, Ian M, Eriksson, John E, Faklaris, Orestis, Fernandez-Rodriguez, Julia, Ferrand, Alexia, Gelman, Laurent, Gheisari, Ali, Hartmann, Hella, Kukat, Christian, Laude, Alex, Mitkovski, Miso, Munck, Sebastian, North, Alison J, Rasse, Tobias M, Resch-Genger, Ute, Schuetz, Lucas C, Seitz, Arne, Strambio-De-Castillia, Caterina, Swedlow, Jason R, Alexopoulos, Ioannis, Aumayr, Karin, Avilov, Sergiy, Bakker, Gert-Jan, Bammann, Rodrigo R, Bassi, Andrea, Beckert, Hannes, Beer, Sebastian, Belyaev, Yury, Bierwagen, Jakob, Birngruber, Konstantin A, Bosch, Manel, Breitlow, Juergen, Cameron, Lisa A, Chalfoun, Joe, Chambers, James J, Chen, Chieh-Li, Conde-Sousa, Eduardo, Corbett, Alexander D, Cordelieres, Fabrice P, Del Nery, Elaine, Dietzel, Ralf, Eismann, Frank, Fazeli, Elnaz, Felscher, Andreas, Fried, Hans, Gaudreault, Nathalie, Goh, Wah Ing, Guilbert, Thomas, Hadleigh, Roland, Hemmerich, Peter, Holst, Gerhard A, Itano, Michelle S, Jaffe, Claudia B, Jambor, Helena K, Jarvis, Stuart C, Keppler, Antje, Kirchenbuechler, David, Kirchner, Marcel, Kobayashi, Norio, Krens, Gabriel, Kunis, Susanne, Lacoste, Judith, Marcello, Marco, Martins, Gabriel G, Metcalf, Daniel J, Mitchell, Claire A, Moore, Joshua, Mueller, Tobias, Nelson, Michael S, Ogg, Stephen, Onami, Shuichi, Palmer, Alexandra L, Paul-Gilloteaux, Perrine, Pimentel, Jaime A, Plantard, Laure, Podder, Santosh, Rexhepaj, Elton, Royon, Arnaud, Saari, Markku A, Schapman, Damien, Schoonderwoert, Vincent, Schroth-Diez, Britta, Schwartz, Stanley, Shaw, Michael, Spitaler, Martin, Stoeckl, Martin T, Sudar, Damir, Teillon, Jeremie, Terjung, Stefan, Thuenauer, Roland, Wilms, Christian D, Wright, Graham D, Nitschke, Roland

Publikováno v: J. Microsc. 2021;1-18

In April 2020, the QUality Assessment and REProducibility for Instruments and Images in Light Microscopy (QUAREP-LiMi) initiative was formed. This initiative comprises imaging scientists from academia and industry who share a common interest in achie

Externí odkaz: http://arxiv.org/abs/2101.09153

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