Zobrazeno 1 - 10
of 66
pro vyhledávání: '"Birgitte B Simen"'
Autor:
Jasmijn A. Baaijens, Alessandro Zulli, Isabel M. Ott, Ioanna Nika, Mart J. van der Lugt, Mary E. Petrone, Tara Alpert, Joseph R. Fauver, Chaney C. Kalinich, Chantal B. F. Vogels, Mallery I. Breban, Claire Duvallet, Kyle A. McElroy, Newsha Ghaeli, Maxim Imakaev, Malaika F. Mckenzie-Bennett, Keith Robison, Alex Plocik, Rebecca Schilling, Martha Pierson, Rebecca Littlefield, Michelle L. Spencer, Birgitte B. Simen, Yale SARS-CoV-2 Genomic Surveillance Initiative, William P. Hanage, Nathan D. Grubaugh, Jordan Peccia, Michael Baym
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-20 (2022)
Abstract Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the ongoing pandemic. Predicting lineage abundance from wastewater, however, is technically challenging. We show that by sequencing SARS-CoV-2 RNA in
Externí odkaz:
https://doaj.org/article/fc8864066ac8466fa436697afeaf32ee
Autor:
Renee D Wegrzyn, Grace D Appiah, Robert Morfino, Scott R Milford, Allison Taylor Walker, Ezra T Ernst, William W Darrow, Siyao Lisa Li, Keith Robison, Duncan MacCannell, Dongjuan Dai, Brintha P Girinathan, Allison L Hicks, Bryan Cosca, Gabrielle Woronoff, Alex M Plocik, Birgitte B Simen, Leah Moriarty, Sarah Anne J Guagliardo, Martin S Cetron, Cindy R Friedman
Publikováno v:
Clinical Infectious Diseases. 76:e540-e543
We enrolled arriving international air travelers in a severe acute respiratory syndrome coronavirus 2 genomic surveillance program. We used molecular testing of pooled nasal swabs and sequenced positive samples for sublineage. Traveler-based surveill
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8ed6b0d139b81cd0ce7570c720bf2499
https://doi.org/10.1093/cid/ciac461
https://doi.org/10.1093/cid/ciac461
Autor:
Arjet Gega, Michael J. Kozal, Jennifer Chiarella, Evelyn Lee, Julia Peterson, Frederick M. Hecht, Teri Liegler, Elizabeth P. St John, Birgitte B. Simen, Richard W. Price, Serena S. Spudich
Publikováno v:
Journal of Virus Eradication, Vol 1, Iss 4, Pp 264-268 (2015)
Background: Limited data exist comparing viral quasispecies between cerebrospinal fluid (CSF) and plasma compartments during primary HIV infection. Deep sequencing is a new method to examine the HIV plasma and CSF quasispecies. Methods: In this pilot
Externí odkaz:
https://doaj.org/article/0c5ace84b85b4a57b59b502472b43b7d
Autor:
Shaili Gupta, Max Lataillade, Tassos C. Kyriakides, Jennifer Chiarella, Elizabeth P. St. John, Suzin Webb, Elizabeth A. Moreno, Birgitte B. Simen, Michael J. Kozal
Publikováno v:
Viruses, Vol 6, Iss 9, Pp 3428-3437 (2014)
Low-frequency HIV variants possessing resistance mutations against non‑nucleoside reverse transcriptase inhibitors (NNRTI), especially at HIV reverse transcriptase (RT) amino acid (aa) positions K103 and Y181, have been shown to adversely affect tr
Externí odkaz:
https://doaj.org/article/72b1b677385548378c718c5cbc684a9c
Autor:
Renee D. Wegrzyn, Grace D. Appiah, Robert Morfino, Scott R. Milford, Allison Taylor Walker, Ezra T. Ernst, William W. Darrow, Siayo Lisa Li, Keith Robison, Duncan MacCannell, Dongjuan Dai, Brintha P. Girinathan, Allison L. Hicks, Bryan Cosca, Gabrielle Woronoff, Alex M. Plocik, Birgitte B. Simen, Leah Moriarty, Sarah Anne J. Guagliardo, Martin S. Cetron, Cindy R. Friedman
We enrolled arriving international air travelers in SARS-CoV-2 genomic surveillance, using molecular testing of pooled nasal swabs, and sequencing positive samples for viral lineage. Traveler-based genomic surveillance provided early warning variant
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3ef1b4ee9bb60e49071dbca2f24a7c4e
https://doi.org/10.1101/2022.03.21.22272490
https://doi.org/10.1101/2022.03.21.22272490
Autor:
Renee D, Wegrzyn, Grace D, Appiah, Robert, Morfino, Scott R, Milford, Allison Taylor, Walker, Ezra T, Ernst, William W, Darrow, Siyao Lisa, Li, Keith, Robison, Duncan, MacCannell, Dongjuan, Dai, Brintha P, Girinathan, Allison L, Hicks, Bryan, Cosca, Gabrielle, Woronoff, Alex M, Plocik, Birgitte B, Simen, Leah, Moriarty, Sarah Anne J, Guagliardo, Martin S, Cetron, Cindy R, Friedman
Publikováno v:
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
We enrolled arriving international air travelers in SARS-CoV-2 genomic surveillance, using molecular testing of pooled nasal swabs, and sequencing positive samples for viral sublineage. Traveler-based genomic surveillance provided early warning varia
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::0faad88de6eee2851f18fa0a65d382df
https://pubmed.ncbi.nlm.nih.gov/35686436
https://pubmed.ncbi.nlm.nih.gov/35686436
Autor:
Elizabeth P St John, Birgitte B Simen, Gregory S Turenchalk, Michael S Braverman, Isabella Abbate, Jeroen Aerssens, Olivier Bouchez, Christian Gabriel, Jacques Izopet, Karolin Meixenberger, Francesca Di Giallonardo, Ralph Schlapbach, Roger Paredes, James Sakwa, Gudrun G Schmitz-Agheguian, Alexander Thielen, Martin Victor, Karin J Metzner, Martin P Däumer, HIV-1 Alpha Study Group
Publikováno v:
PLoS ONE, Vol 11, Iss 1, p e0146687 (2016)
Ultra deep sequencing is of increasing use not only in research but also in diagnostics. For implementation of ultra deep sequencing assays in clinical laboratories for routine diagnostics, intra- and inter-laboratory testing are of the utmost import
Externí odkaz:
https://doaj.org/article/a4961bf50e52452a89b38a806cc6e439
Autor:
Alessandro Zulli, Isabel M. Ott, Michael H. Baym, Birgitte B. Simen, Newsha Ghaeli, Tara Alpert, Jasmijn A. Baaijens, Joseph R. Fauver, Martha Pierson, Alex Plocik, Malaika Mckenzie-Bennett, Nathan D. Grubaugh, Chantal B.F. Vogels, Chaney C. Kalinich, Claire Duvallet, Rebecca Littlefield, Michelle Spencer, Maxim Imakaev, William P. Hanage, Keith Robison, Kyle A. McElroy, Rebecca Schilling, Mary E. Petrone, Yale SARS-CoV Genomic Surveillance Initiative, Mallery I. Breban, Jordan Peccia
Publikováno v:
medRxiv
article-version (status) pre
article-version (number) 1
article-version (status) pre
article-version (number) 1
Effectively monitoring the spread of SARS-CoV-2 variants is essential to efforts to counter the ongoing pandemic. Wastewater monitoring of SARS-CoV-2 RNA has proven an effective and efficient technique to approximate COVID-19 case rates in the popula
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a566e44d02ee69aa759ed5dc009a8781
https://pubmed.ncbi.nlm.nih.gov/36348471
https://pubmed.ncbi.nlm.nih.gov/36348471
Autor:
Devin Sok, Uri Laserson, Jonathan Laserson, Yi Liu, Francois Vigneault, Jean-Philippe Julien, Bryan Briney, Alejandra Ramos, Karen F. Saye, Khoa Le, Alison Mahan, Shenshen Wang, Mehran Kardar, Gur Yaari, Laura M. Walker, Birgitte B. Simen, Elizabeth P. St. John, Po-Ying Chan-Hui, Kristine Swiderek, Stephen H. Kleinstein, Galit Alter, Michael S. Seaman, Arup K. Chakraborty, Daphne Koller, Ian A. Wilson, George M. Church, Dennis R. Burton, Pascal Poignard
Publikováno v:
PLoS Pathogens, Vol 9, Iss 12 (2013)
Externí odkaz:
https://doaj.org/article/3d37c901f805490294c80ad1ef2a5381
Autor:
Devin Sok, Uri Laserson, Jonathan Laserson, Yi Liu, Francois Vigneault, Jean-Philippe Julien, Bryan Briney, Alejandra Ramos, Karen F Saye, Khoa Le, Alison Mahan, Shenshen Wang, Mehran Kardar, Gur Yaari, Laura M Walker, Birgitte B Simen, Elizabeth P St John, Po-Ying Chan-Hui, Kristine Swiderek, Steven H Kleinstein, Galit Alter, Michael S Seaman, Arup K Chakraborty, Daphne Koller, Ian A Wilson, George M Church, Dennis R Burton, Pascal Poignard
Publikováno v:
PLoS Pathogens, Vol 9, Iss 11, p e1003754 (2013)
Broadly neutralizing HIV antibodies (bnAbs) are typically highly somatically mutated, raising doubts as to whether they can be elicited by vaccination. We used 454 sequencing and designed a novel phylogenetic method to model lineage evolution of the
Externí odkaz:
https://doaj.org/article/2904622cd3c446a68927030a0ec4fe05