Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

Autor: Jolene Ramsey, Brenley McIntosh, Daniel Renfro, Suzanne A. Aleksander, Sandra LaBonte, Curtis Ross, Adrienne E. Zweifel, Nathan Liles, Shabnam Farrar, Jason J. Gill, Ivan Erill, Sarah Ades, Tanya Z. Berardini, Jennifer A. Bennett, Siobhan Brady, Robert Britton, Seth Carbon, Steven M. Caruso, Dave Clements, Ritu Dalia, Meredith Defelice, Erin L. Doyle, Iddo Friedberg, Susan M. R. Gurney, Lee Hughes, Allison Johnson, Jason M. Kowalski, Donghui Li, Ruth C. Lovering, Tamara L. Mans, Fiona McCarthy, Sean D. Moore, Rebecca Murphy, Timothy D. Paustian, Sarah Perdue, Celeste N. Peterson, Birgit M. Prüß, Margaret S. Saha, Robert R. Sheehy, John T. Tansey, Louise Temple, Alexander William Thorman, Saul Trevino, Amy Cheng Vollmer, Virginia Walbot, Joanne Willey, Deborah A. Siegele, James C. Hu

Publikováno v: PLoS Computational Biology, Vol 17, Iss 10 (2021)

Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying

Externí odkaz: https://doaj.org/article/e1b8e037e5fb463fad2c0350fb2083e1

Migration Rates on Swim Plates Vary between Escherichia coli Soil Isolates: Differences Are Associated with Variants in Metabolic Genes

Autor: Birgit M. Prüß, Shelley M. Horne, Erika Shay Bauer, Collin Pirner, Madelyn Schwartz, Morgan L. Petersen, Peter W. Bergholz

Publikováno v: Applied and Environmental Microbiology. 89

E. coli is a Gram-negative, facultative anaerobic bacterium whose life cycle includes extra host environments in addition to human, animal, and plant hosts. The bacterium has the genomic capability of being motile.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::9cdf9aa7b525d62b86cf9736642e3ea5
https://doi.org/10.1128/aem.01727-22

Plos Computational Biology

Autor: Tamara L. Mans, Seth Carbon, Susan M. R. Gurney, Meredith Defelice, Larissa K. Temple, Ritu R. Dalia, Robert A. Britton, Birgit M. Prüß, Joanne M. Willey, Suzanne A. Aleksander, Jason J. Gill, Lee E. Hughes, Ruth C. Lovering, Virginia Walbot, Erin L. Doyle, Donghui Li, Shabnam Farrar, Sean D. Moore, Jolene Ramsey, Iddo Friedberg, Deborah A. Siegele, Tanya Z. Berardini, B. K. McIntosh, Alexander William Thorman, Nathan M. Liles, Margaret S. Saha, Ivan Erill, Allison Johnson, John T. Tansey, Celeste Peterson, Rebecca L. Murphy, Jason M. Kowalski, Daniel P. Renfro, Timothy D. Paustian, James C. Hu, Sarah E. Ades, Sandra A. LaBonte, Adrienne E. Zweifel, Curtis Ross, Fiona M. McCarthy, Steven M. Caruso, Sarah Perdue, Dave Clements, Amy Cheng Vollmer, Robert R. Sheehy, Jennifer A. Bennett, Siobhan M. Brady, Saul R. Trevino

Publikováno v: PLoS Computational Biology, Vol 17, Iss 10 (2021)
PLoS Computational Biology, Vol 17, Iss 10, p e1009463 (2021)
PLoS computational biology, vol 17, iss 10
PLoS Computational Biology

Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2136d9c79b7979202d798ea2c18c708e
https://hdl.handle.net/10919/109480

Involvement of Two-Component Signaling on Bacterial Motility and Biofilm Development

Autor: Birgit M. Prüß

Two-component signaling is a specialized mechanism that bacteria use to respond to changes in their environment. Nonpathogenic strains of Escherichia coli K-12 harbor 30 histidine kinases and 32 response regulators, which form a network of regulation

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67b1ef42ddfc12e5e79dd4ebaf8bac99
https://europepmc.org/articles/PMC5573070/

Spontaneous mutations in the flhD operon generate motility heterogeneity in Escherichia coli biofilm

Autor: Joseph Sayler, Birgit M. Prüß, Meredith Schroeder, Nicholas Scarberry, Shelley M. Horne, Ty Lynnes

Publikováno v: BMC Microbiology

Background Heterogeneity and niche adaptation in bacterial biofilm involve changes to the genetic makeup of the bacteria and gene expression control. We hypothesized that i) spontaneous mutations in the flhD operon can either increase or decrease mot

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5820db6de385a82f3731fe6220749992
http://europepmc.org/articles/PMC5100188