Zobrazeno 1 - 10
of 228
pro vyhledávání: '"BioPAX : Biological Pathways Exchange"'
Publikováno v:
BMC Microbiology, Vol 21, Iss 1, Pp 1-12 (2021)
BMC Microbiology
BMC Microbiology
Background The abundance of glycomics data that have accumulated has led to the development of many useful databases to aid in the understanding of the function of the glycans and their impact on cellular activity. At the same time, the endeavor for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::90dc809475b4349c09a6cd2e15a94263
https://doi.org/10.1186/s12866-021-02384-y
https://doi.org/10.1186/s12866-021-02384-y
Autor:
Mario Cannataro, Giuseppe Agapito
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 22, Iss S13, Pp 1-35 (2021)
BMC Bioinformatics, Vol 22, Iss S13, Pp 1-35 (2021)
Background Pathway enrichment analysis (PEA) is a well-established methodology for interpreting a list of genes and proteins of interest related to a condition under investigation. This paper aims to extend our previous work in which we introduced a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::13ac14b1f5f756f0b2ed9f67601b579c
https://doi.org/10.1186/s12859-021-04297-z
https://doi.org/10.1186/s12859-021-04297-z
Autor:
Rafael Pereira, Bruno Augusti Mozzaquatro, Matheus Dalmolin da Silva, Ricardo Giuliani Martini, Jéssica Augusti Bonini, Giovani Rubert Librelotto
Publikováno v:
Advances in Intelligent Systems and Computing ISBN: 9783030545673
PACBB
PACBB
In the field of bioinformatics, ontologies prove to be very useful for dealing with massive amounts of data are generated by several biological studies. Ontologies, recently, have been used to support the gathering, organization, and integration of i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e1e263dec48ad5f58fc7c8139e726351
https://doi.org/10.1007/978-3-030-54568-0_14
https://doi.org/10.1007/978-3-030-54568-0_14
MotivationGene networks are complex sets of regulators and interactions that govern cellular processes. Their perturbations can disrupt regular biological functions, translating into a change in cell behaviour and ability to respond to internal and e
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::165990946023020ee446c4c3d6ad019d
https://doi.org/10.1101/2020.05.29.122200
https://doi.org/10.1101/2020.05.29.122200
Autor:
Giuseppe Agapito, Mario Cannataro
Publikováno v:
Lecture Notes in Computer Science ISBN: 9783030658465
ER (Workshops)
ER (Workshops)
Proteins and genes are widely involved in activation or inhibition of the communication flow between a receptor and a transcription factor within a biological pathway. The key to fully understand proteins’ functional roles is the deduction of the r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c5c49482ae12032869d8dcd6a803965b
https://doi.org/10.1007/978-3-030-65847-2_9
https://doi.org/10.1007/978-3-030-65847-2_9
Autor:
David S. Wishart, Maïlys Paccoud, Christopher Chan, Hasan Badran, Xuan Cao, William Wei, Krissa Li, Allison Pon, Jonas Patron, Miguel Ramirez-Gaona, Debra Lipton, Carin Li, Eponine Oler, An Chi Guo, Zachary Budinski, Chelsea Hong, Ana Marcu
Publikováno v:
Nucleic acids research 48 (2020) D1
Nucleic acids research, 48(D1), D470-D478
Nucleic Acids Research
Nucleic acids research, 48(D1), D470-D478
Nucleic Acids Research
PathBank (www.pathbank.org) is a new, comprehensive, visually rich pathway database containing more than 110 000 machine-readable pathways found in 10 model organisms (Homo sapiens, Bos taurus, Rattus norvegicus, Mus musculus, Drosophila melanogaster
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8912a30db15062f882d9db6bf1014abd
https://research.wur.nl/en/publications/pathbank-a-comprehensive-pathway-database-for-model-organisms
https://research.wur.nl/en/publications/pathbank-a-comprehensive-pathway-database-for-model-organisms
Autor:
Chris Sander, Max Franz, Manfred Cheung, Qizhi Wen, Bulent Arman Aksoy, Jeffrey V. Wong, Michael Wrana, Jonah Dlin, Ethan Cerami, Ugur Dogrusoz, Geoffrey Elder, Benjamin Gross, Igor Rodchenkov, Christian Dallago, Augustin Luna, Metin Can Siper, Peter T. Smith, Caitlin O'Callaghan, Logan Mosier, Özgün Babur, Emek Demir, Wanxin Li, Gary D. Bader, Harsh Mistry, Dylan Fong
Publikováno v:
Nucleic Acids Research
Pathway Commons (https://www.pathwaycommons.org) is an integrated resource of publicly available information about biological pathways including biochemical reactions, assembly of biomolecular complexes, transport and catalysis events and physical in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2533fcd29960390fe524447ce0d3d88b
https://doi.org/10.1093/nar/gkz946
https://doi.org/10.1093/nar/gkz946
Publikováno v:
Bioinformatics (Oxford, England). 36(15)
Summary Biological pathways are fundamental for learning about healthy and disease states. Many existing formats support automatic software analysis of biological pathways, e.g. BioPAX (Biological Pathway Exchange). Although some algorithms are avail
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3821f8253aaca1b975130f8383495283
https://pubmed.ncbi.nlm.nih.gov/32437515
https://pubmed.ncbi.nlm.nih.gov/32437515
Autor:
Caitlin O'Callaghan, Igor Rodchenkov, Qizhi Wen, Bulent Arman Aksoy, Emek Demir, Peter T. Smith, Metin Can Siper, Logan Mosier, Ugur Dogrusoz, Chris Sander, Michael Wrana, Jonah Dlin, Harsh Mistry, Manfred Cheung, Ethan Cerami, Benjamin Gross, Dylan Fong, Özgün Babur, Christian Dallago, Augustin Luna, Max Franz, Gary D. Bader, Wanxin Li, Geoffrey Elder, Jeffrey V. Wong
Pathway Commons (https://www.pathwaycommons.org) is an integrated resource of publicly available information about biological pathways including biochemical reactions, assembly of biomolecular complexes, transport and catalysis events and physical in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8c57abd0226646b10dc11334507e2473
Autor:
Falk Schreiber, Michael Hucka, Sarah M. Keating, Björn Sommer, Matthias König, David P. Nickerson, Gary D. Bader, Dagmar Waltemath, Padraig Gleeson, Chris J. Myers, Martin Golebiewski
Publikováno v:
Journal of Integrative Bioinformatics, Vol 16, Iss 2, Pp 19-95 (2019)
Journal of Integrative Bioinformatics
Journal of Integrative Bioinformatics
This special issue of the Journal of Integrative Bioinformatics presents an overview of COMBINE standards and their latest specifications. The standards cover representation formats for computational modeling in synthetic and systems biology and incl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3246196d3293da5c863d57d9d26dd18e