Machine learning models of plasma proteomic data predict mood in chronic stroke and tie it to aberrant peripheral immune responses

Autor: Bidoki, Neda H., Zera, Kristy A., Nassar, Huda, Drag, Lauren L., Mlynash, Michael, Osborn, Elizabeth, Musabbir, Muhith, Kim, Da Eun, Paula Mendez, Maria, Lansberg, Maarten G., Aghaeepour, Nima, Buckwalter, Marion S.

Publikováno v: In Brain Behavior and Immunity November 2023 114:144-153

In‐silico generation of high‐dimensional immune response data in patients using a deep neural network.

Autor: Fallahzadeh, Ramin, Bidoki, Neda H., Stelzer, Ina A., Becker, Martin, Marić, Ivana, Chang, Alan L., Culos, Anthony, Phongpreecha, Thanaphong, Xenochristou, Maria, De Francesco, Davide, Espinosa, Camilo, Berson, Eloise, Verdonk, Franck, Angst, Martin S., Gaudilliere, Brice, Aghaeepour, Nima

Publikováno v: Cytometry. Part A; May2023, Vol. 103 Issue 5, p392-404, 13p

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Large-scale correlation network construction for unraveling the coordination of complex biological systems.

Autor: Becker M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Computer Science and Electrical Engineering, University of Rostock, Rostock, Germany.; These authors contributed equally: Martin Becker, Huda Nassar, Camilo Espinosa., Nassar H; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; These authors contributed equally: Martin Becker, Huda Nassar, Camilo Espinosa., Espinosa C; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; These authors contributed equally: Martin Becker, Huda Nassar, Camilo Espinosa., Stelzer IA; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA., Feyaerts D; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA., Berson E; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Bidoki NH; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Chang AL; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Saarunya G; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Culos A; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., De Francesco D; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Fallahzadeh R; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Liu Q; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Kim Y; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Marić I; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Mataraso SJ; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Payrovnaziri SN; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Phongpreecha T; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pathology, Stanford University School of Medicine, Palo Alto, CA, USA., Ravindra NG; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Stanley N; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Shome S; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Tan Y; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Thuraiappah M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Xenochristou M; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Xue L; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA., Shaw G; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA., Stevenson D; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA., Angst MS; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA., Gaudilliere B; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA., Aghaeepour N; Department of Anesthesiology, Perioperative and Pain Medicine, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Pediatrics, Stanford University School of Medicine, Palo Alto, CA, USA.; Department of Biomedical Data Science, Stanford University School of Medicine, Palo Alto, CA, USA.

Publikováno v: Nature computational science [Nat Comput Sci] 2023 Apr; Vol. 3 (4), pp. 346-359. Date of Electronic Publication: 2023 Apr 13.