Zobrazeno 1 - 7
of 7
pro vyhledávání: '"Bernhard C. Thiel"'
Autor:
Doo Nam Kim, Bernhard C. Thiel, Tyler Mrozowich, Scott P. Hennelly, Ivo L. Hofacker, Trushar R. Patel, Karissa Y. Sanbonmatsu
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Many RNA systems possess highly ordered 3-D structures that are essential to their function. Here the authors demonstrate that the long non-coding RNA Braveheart possesses a flexible but defined 3-D structure which is remodeled upon binding the prote
Externí odkaz:
https://doaj.org/article/b7b190fd83ef4f3290654e561d22e685
Publikováno v:
F1000Research, Vol 8 (2019)
We present forgi, a Python library to analyze the tertiary structure of RNA secondary structure elements. Our representation of an RNA molecule is centered on secondary structure elements (stems, bulges and loops). By fitting a cylinder to the helix
Externí odkaz:
https://doaj.org/article/8f825b7954274b878b5bfa5bbcb19a17
The determination of the three-dimensional structure of large RNA macromolecules in solution is a challenging task that often requires the use of several experimental and computational techniques. Small-angle X-ray spectroscopy can provide insight in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::054188baa2b391547944cb34333109f0
https://doi.org/10.1101/2022.07.02.498583
https://doi.org/10.1101/2022.07.02.498583
Publikováno v:
F1000Research
We present forgi, a Python library to analyze the tertiary structure of RNA secondary structure elements. Our representation of an RNA molecule is centered on secondary structure elements (stems, bulges and loops). By fitting a cylinder to the helix
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6fbd31faa32b83c6e8389ead3a6790f8
https://hdl.handle.net/11353/10.1144103
https://hdl.handle.net/11353/10.1144103
We summarize different levels of RNA structure prediction, from classical 2D structure to extended secondary structure and motif-based research toward 3D structure prediction of RNA. We outline the importance of classical secondary structure during a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::36a67f45e8f6a752000dd4782277e415
https://doi.org/10.1042/etls20160027
https://doi.org/10.1042/etls20160027
Autor:
Bernhard C. Thiel, Peter F. Stadler, Maria Emilia M. T. Walter, Alexander Holzenleiter, Maria Waldl, João Victor de Araujo Oliveira, Roman Ochsenreiter, Michael T. Wolfinger
Publikováno v:
Genes, Vol 9, Iss 8, p 372 (2018)
Genes
Volume 9
Issue 8
Genes
Volume 9
Issue 8
The telomerase RNA in yeasts is large, usually >
1000 nt, and contains functional elements that have been extensively studied experimentally in several disparate species. Nevertheless, they are very difficult to detect by homology-based method
1000 nt, and contains functional elements that have been extensively studied experimentally in several disparate species. Nevertheless, they are very difficult to detect by homology-based method
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e848eaaeeee361a7a0575741577ff00
Publikováno v:
Tetrahedron Letters. 54:681-683
The chemistry of oxodiazirine 1 was investigated by photolyzing its α-cyclodextrin (6-Cy) complex, for which a Job plot indicated a 1:2 guest-to-host stoichiometry. Solid-phase photolysis of 1@(6-Cy)2 produced tricyclo[3.3.0.02,8]octan-3-one (3) and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8d66011846fd00696ad11177c912e6d0
https://doi.org/10.1016/j.tetlet.2012.12.008
https://doi.org/10.1016/j.tetlet.2012.12.008