Zobrazeno 1 - 10
of 1 331
pro vyhledávání: '"Bernetti, A."'
Autor:
Tribello, Gareth A., Bonomi, Massimiliano, Bussi, Giovanni, Camilloni, Carlo, Armstrong, Blake I., Arsiccio, Andrea, Aureli, Simone, Ballabio, Federico, Bernetti, Mattia, Bonati, Luigi, Brookes, Samuel G. H., Brotzakis, Z. Faidon, Capelli, Riccardo, Ceriotti, Michele, Chan, Kam-Tung, Cossio, Pilar, Dasetty, Siva, Donadio, Davide, Ensing, Bernd, Ferguson, Andrew L., Fraux, Guillaume, Gale, Julian D., Gervasio, Francesco Luigi, Giorgino, Toni, Herringer, Nicholas S. M., Hocky, Glen M., Hoff, Samuel E., Invernizzi, Michele, Languin-Cattöen, Olivier, Leone, Vanessa, Limongelli, Vittorio, Lopez-Acevedo, Olga, Marinelli, Fabrizio, Martinez, Pedro Febrer, Masetti, Matteo, Mehdi, Shams, Michaelides, Angelos, Murtada, Mhd Hussein, Parrinello, Michele, Piaggi, Pablo M., Pietropaolo, Adriana, Pietrucci, Fabio, Pipolo, Silvio, Pritchard, Claire, Raiteri, Paolo, Raniolo, Stefano, Rapetti, Daniele, Rizzi, Valerio, Rydzewski, Jakub, Salvalaglio, Matteo, Schran, Christoph, Seal, Aniruddha, Zadeh, Armin Shayesteh, Silva, Tomás F. D., Spiwok, Vojtěch, Stirnemann, Guillaume, Sucerquia, Daniel, Tiwary, Pratyush, Valsson, Omar, Vendruscolo, Michele, Voth, Gregory A., White, Andrew D., Wu, Jiangbo
In computational physics, chemistry, and biology, the implementation of new techniques in a shared and open source software lowers barriers to entry and promotes rapid scientific progress. However, effectively training new software users presents sev
Externí odkaz:
http://arxiv.org/abs/2412.03595
Autor:
Giacomo Farì, Carlo Mariconda, Laura Dell’Anna, Francesco Quarta, Danilo Donati, Cristiano Sconza, Vincenzo Ricci, Giustino Varrassi, Valeria Coco, Alessandro Manelli, Ennio Spadini, Maria Teresa Giglio, Andrea Bernetti
Publikováno v:
Clinics and Practice, Vol 14, Iss 4, Pp 1478-1495 (2024)
Spine pain (SP) is the most common musculoskeletal disorder that causes transitional forms of motor disability. Considering its affordability and safety, manipulative therapy (MT) stands as one of the primary therapeutic approaches for SP and the rel
Externí odkaz:
https://doaj.org/article/c9002b7e8fb7479ba757561857611157
Publikováno v:
J. Chem. Phys. 158, 214120 (2023)
A novel method combining maximum entropy principle, the Bayesian-inference of ensembles approach, and the optimization of empirical forward models is presented. Here we focus on the Karplus parameters for RNA systems, which relate the dihedral angles
Externí odkaz:
http://arxiv.org/abs/2303.09372
Publikováno v:
In: Barciszewski, J. (eds) RNA Structure and Function. RNA Technologies, vol 14 (2023). Springer, Cham
Post-transcriptional modifications are crucial for RNA function, with roles ranging from the stabilization of functional RNA structures to modulation of RNA--protein interactions. Additionally, artificially modified RNAs have been suggested as optima
Externí odkaz:
http://arxiv.org/abs/2211.13657
Publikováno v:
J. Chem. Theory Comput, 19, 3672 (2023)
Chemical probing experiments such as SHAPE are routinely used to probe RNA molecules. In this work, we use atomistic molecular dynamics simulations to test the hypothesis that binding of RNA with SHAPE reagents is affected by cooperative effects lead
Externí odkaz:
http://arxiv.org/abs/2209.12640
Autor:
Bernetti, Mattia, Bussi, Giovanni
Publikováno v:
Curr. Opin. Struct. Biol. 78, 102503 (2023)
Conformational dynamics is crucial for ribonucleic acid (RNA) function. Techniques such as nuclear magnetic resonance, cryo-electron microscopy, small- and wide-angle X-ray scattering, chemical probing, single-molecule F\"orster resonance energy tran
Externí odkaz:
http://arxiv.org/abs/2207.08622
Autor:
Francesco Cervone, Sebastien Prigent, Andrea Bernetti, Massimiliano Mangone, Giuseppe Giannicola
Publikováno v:
JSES International, Vol 8, Iss 6, Pp 1328-1329 (2024)
Externí odkaz:
https://doaj.org/article/a2565b53ed384374bdf5196cec6832c2
Autor:
Mallio, Carlo A., Volterrani, Claudia, Stiffi, Massimo, Mancuso, Valeria, Bernetti, Caterina, Greco, Federico, Quattrocchi, Carlo C., Parizel, Paul M., Van Goethem, Johan, Beomonte Zobel, Bruno
Publikováno v:
In Academic Radiology November 2024 31(11):4568-4574
Autor:
Bernetti, Alessandro, Barili, Sofia, Sannino, Ciro, Mugnai, Gianmarco, Borruso, Luigimaria, Pinchuk, Irina, Pezzolla, Daniela, Turchetti, Benedetta, Gigliotti, Giovanni, Buzzini, Pietro
Publikováno v:
In Environmental Research 1 January 2025 264 Part 1
Publikováno v:
ACS Cent. Sci. 2022, 8, 8, 1218-1228
Post-transcriptional modifications are crucial for RNA function and can affect its structure and dynamics. Force-field based classical molecular dynamics simulations are a fundamental tool to characterize biomolecular dynamics and their application t
Externí odkaz:
http://arxiv.org/abs/2203.14886