Zobrazeno 1 - 10
of 37
pro vyhledávání: '"Bernard Y Kim"'
Autor:
Bernard Y Kim, Hannah R Gellert, Samuel H Church, Anton Suvorov, Sean S Anderson, Olga Barmina, Sofia G Beskid, Aaron A Comeault, K Nicole Crown, Sarah E Diamond, Steve Dorus, Takako Fujichika, James A Hemker, Jan Hrcek, Maaria Kankare, Toru Katoh, Karl N Magnacca, Ryan A Martin, Teruyuki Matsunaga, Matthew J Medeiros, Danny E Miller, Scott Pitnick, Michele Schiffer, Sara Simoni, Tessa E Steenwinkel, Zeeshan A Syed, Aya Takahashi, Kevin H-C Wei, Tsuya Yokoyama, Michael B Eisen, Artyom Kopp, Daniel Matute, Darren J Obbard, Patrick M O'Grady, Donald K Price, Masanori J Toda, Thomas Werner, Dmitri A Petrov
Publikováno v:
PLoS Biology, Vol 22, Iss 7, p e3002697 (2024)
Long-read sequencing is driving rapid progress in genome assembly across all major groups of life, including species of the family Drosophilidae, a longtime model system for genetics, genomics, and evolution. We previously developed a cost-effective
Externí odkaz:
https://doaj.org/article/2beb7f36060d498498a23258a4f431c2
Autor:
Sarah Signor, Jeffrey Vedanayagam, Bernard Y Kim, Filip Wierzbicki, Robert Kofler, Eric C Lai
Publikováno v:
PLoS Genetics, Vol 19, Iss 8, p e1010914 (2023)
Suppression of transposable elements (TEs) is paramount to maintain genomic integrity and organismal fitness. In D. melanogaster, the flamenco locus is a master suppressor of TEs, preventing the mobilization of certain endogenous retrovirus-like TEs
Externí odkaz:
https://doaj.org/article/85b67978c56e4aaf99dea3b32a57f25d
Autor:
Bernard Y Kim, Jeremy R Wang, Danny E Miller, Olga Barmina, Emily Delaney, Ammon Thompson, Aaron A Comeault, David Peede, Emmanuel RR D'Agostino, Julianne Pelaez, Jessica M Aguilar, Diler Haji, Teruyuki Matsunaga, Ellie Armstrong, Molly Zych, Yoshitaka Ogawa, Marina Stamenković-Radak, Mihailo Jelić, Marija Savić Veselinović, Marija Tanasković, Pavle Erić, Jian-Jun Gao, Takehiro K Katoh, Masanori J Toda, Hideaki Watabe, Masayoshi Watada, Jeremy S Davis, Leonie C Moyle, Giulia Manoli, Enrico Bertolini, Vladimír Košťál, R Scott Hawley, Aya Takahashi, Corbin D Jones, Donald K Price, Noah Whiteman, Artyom Kopp, Daniel R Matute, Dmitri A Petrov
Publikováno v:
eLife, Vol 11 (2022)
Externí odkaz:
https://doaj.org/article/d98125319e5e400194d09f561565f68d
Autor:
Bernard Y Kim, Jeremy R Wang, Danny E Miller, Olga Barmina, Emily Delaney, Ammon Thompson, Aaron A Comeault, David Peede, Emmanuel RR D'Agostino, Julianne Pelaez, Jessica M Aguilar, Diler Haji, Teruyuki Matsunaga, Ellie E Armstrong, Molly Zych, Yoshitaka Ogawa, Marina Stamenković-Radak, Mihailo Jelić, Marija Savić Veselinović, Marija Tanasković, Pavle Erić, Jian-Jun Gao, Takehiro K Katoh, Masanori J Toda, Hideaki Watabe, Masayoshi Watada, Jeremy S Davis, Leonie C Moyle, Giulia Manoli, Enrico Bertolini, Vladimír Košťál, R Scott Hawley, Aya Takahashi, Corbin D Jones, Donald K Price, Noah Whiteman, Artyom Kopp, Daniel R Matute, Dmitri A Petrov
Publikováno v:
eLife, Vol 10 (2021)
Over 100 years of studies in Drosophila melanogaster and related species in the genus Drosophila have facilitated key discoveries in genetics, genomics, and evolution. While high-quality genome assemblies exist for several species in this group, they
Externí odkaz:
https://doaj.org/article/c9a4e43af79a4652bb1b17ca0d8011cd
Autor:
Jeffrey R Adrion, Christopher B Cole, Noah Dukler, Jared G Galloway, Ariella L Gladstein, Graham Gower, Christopher C Kyriazis, Aaron P Ragsdale, Georgia Tsambos, Franz Baumdicker, Jedidiah Carlson, Reed A Cartwright, Arun Durvasula, Ilan Gronau, Bernard Y Kim, Patrick McKenzie, Philipp W Messer, Ekaterina Noskova, Diego Ortega-Del Vecchyo, Fernando Racimo, Travis J Struck, Simon Gravel, Ryan N Gutenkunst, Kirk E Lohmueller, Peter L Ralph, Daniel R Schrider, Adam Siepel, Jerome Kelleher, Andrew D Kern
Publikováno v:
eLife, Vol 9 (2020)
The explosion in population genomic data demands ever more complex modes of analysis, and increasingly, these analyses depend on sophisticated simulations. Recent advances in population genetic simulation have made it possible to simulate large and c
Externí odkaz:
https://doaj.org/article/3524c850e8cf4035a0c097b7202a542b
Publikováno v:
PLoS Genetics, Vol 16, Iss 5, p e1008827 (2020)
Comparative genomic approaches have been used to identify sites where mutations are under purifying selection and of functional consequence by searching for sequences that are conserved across distantly related species. However, the performance of th
Externí odkaz:
https://doaj.org/article/0cf7df2c05364f4c8e2df8e898eb1637
Publikováno v:
PLoS Genetics, Vol 14, Iss 10, p e1007741 (2018)
While it is appreciated that population size changes can impact patterns of deleterious variation in natural populations, less attention has been paid to how gene flow affects and is affected by the dynamics of deleterious variation. Here we use popu
Externí odkaz:
https://doaj.org/article/9ca2dc02a00b4a81baa6146bbb12aa8a
Autor:
Jian‐jun Gao, Olga Barmina, Ammon Thompson, Bernard Y. Kim, Anton Suvorov, Kohtaro Tanaka, Hideaki Watabe, Masanori J. Toda, Ji‐Min Chen, Takehiro K. Katoh, Artyom Kopp
Publikováno v:
Evolution. 76:2089-2104
Animal evolution is characterized by frequent turnover of sexually dimorphic traits – new sex- specific characters are gained, and some ancestral sex-specific characters are lost, in many lineages. In insects, sexual differentiation is predominantl
Autor:
Elizabeth Dong Nguyen, Vahid Nikoonejad Fard, Bernard Y. Kim, Sarah Collins, Miranda Galey, Branden R. Nelson, Paul Wakenight, Simone M. Gable, Aaron McKenna, Theo K. Bammler, Jim MacDonald, Daryl M. Okamura, Jay Shendure, David R. Beier, Jan Marino Ramirez, Mark W. Majesky, Kathleen J. Millen, Marc Tollis, Danny E. Miller
There is increasing interest in the African spiny mouse (Acomys cahirinus) as a model organism because of its ability for regeneration of tissue after injury in skin, muscle, and internal organs such as the kidneys. A high-quality reference genome is
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ccccecf4aa9964387b04c41961eb88f4
https://doi.org/10.1101/2023.04.03.535372
https://doi.org/10.1101/2023.04.03.535372
Autor:
Emily R. Ebel, Bernard Y. Kim, Marina McDew-White, Elizabeth S. Egan, Timothy J.C. Anderson, Dmitri A. Petrov
Sequence variation among antigenicvargenes enablesPlasmodium falciparummalaria parasites to evade host immunity. Using long sequence reads from haploid clones from a mutation accumulation experiment, we detectvardiversity inconsistent with simple chr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b135376d26fe9db9fa8fe705a54dd36e
https://doi.org/10.1101/2023.02.02.526885
https://doi.org/10.1101/2023.02.02.526885