Zobrazeno 1 - 10
of 867
pro vyhledávání: '"Bergmann Frank"'
Autor:
Smith Lucian P., Bergmann Frank T., Garny Alan, Helikar Tomáš, Karr Jonathan, Nickerson David, Sauro Herbert, Waltemath Dagmar, König Matthias
Publikováno v:
Journal of Integrative Bioinformatics, Vol 21, Iss 1 (2024)
Modern biological research is increasingly informed by computational simulation experiments, which necessitate the development of methods for annotating, archiving, sharing, and reproducing the conducted experiments. These simulations increasingly re
Externí odkaz:
https://doaj.org/article/ecf0894e52704818b8ab11825f64a6c9
Autor:
Schaff James C., Lakshminarayana Anuradha, Murphy Robert F., Bergmann Frank T., Funahashi Akira, Sullivan Devin P., Smith Lucian P.
Publikováno v:
Journal of Integrative Bioinformatics, Vol 20, Iss 1 (2023)
While many biological processes can be modeled by abstracting away the space in which those processes occur, some modeling (particularly at the cellular level) requires space itself to be modeled, with processes happening not in well-mixed compartmen
Externí odkaz:
https://doaj.org/article/f53a158868fc4ed9861524443532f67a
Autor:
Smith Lucian P., Bergmann Frank T., Garny Alan, Helikar Tomáš, Karr Jonathan, Nickerson David, Sauro Herbert, Waltemath Dagmar, König Matthias
Publikováno v:
Journal of Integrative Bioinformatics, Vol 18, Iss 3 (2021)
Computational simulation experiments increasingly inform modern biological research, and bring with them the need to provide ways to annotate, archive, share and reproduce the experiments performed. These simulations increasingly require extensive co
Externí odkaz:
https://doaj.org/article/3e082884483b497e96fb673bde173426
Autor:
Smith Lucian P., Moodie Stuart L., Bergmann Frank T., Gillespie Colin, Keating Sarah M., König Matthias, Myers Chris J., Swat Maciek J., Wilkinson Darren J., Hucka Michael
Publikováno v:
Journal of Integrative Bioinformatics, Vol 17, Iss 2-3 (2020)
Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does no
Externí odkaz:
https://doaj.org/article/f0c50c7308ce49e5a3746301c7215aed
Autor:
Bergmann Frank T., Czauderna Tobias, Dogrusoz Ugur, Rougny Adrien, Dräger Andreas, Touré Vasundra, Mazein Alexander, Blinov Michael L., Luna Augustin
Publikováno v:
Journal of Integrative Bioinformatics, Vol 17, Iss 2-3 (2020)
This document defines Version 0.3 Markup Language (ML) support for the Systems Biology Graphical Notation (SBGN), a set of three complementary visual languages developed for biochemists, modelers, and computer scientists. SBGN aims at representing ne
Externí odkaz:
https://doaj.org/article/f62318a5df25471a98b3f21d09eb1c76
Autor:
Hucka Michael, Bergmann Frank T., Chaouiya Claudine, Dräger Andreas, Hoops Stefan, Keating Sarah M., König Matthias, Novère Nicolas Le, Myers Chris J., Olivier Brett G., Sahle Sven, Schaff James C., Sheriff Rahuman, Smith Lucian P., Waltemath Dagmar, Wilkinson Darren J., Zhang Fengkai
Publikováno v:
Journal of Integrative Bioinformatics, Vol 16, Iss 2 (2019)
Computational models can help researchers to interpret data, understand biological functions, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form t
Externí odkaz:
https://doaj.org/article/e263ddd1c38f4b3d9fe553b1d0efe52a
Autor:
Hucka Michael, Bergmann Frank T., Dräger Andreas, Hoops Stefan, Keating Sarah M., Le Novère Nicolas, Myers Chris J., Olivier Brett G., Sahle Sven, Schaff James C., Smith Lucian P., Waltemath Dagmar, Wilkinson Darren J.
Publikováno v:
Journal of Integrative Bioinformatics, Vol 15, Iss 1 (2018)
Computational models can help researchers to interpret data, understand biological functions, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form t
Externí odkaz:
https://doaj.org/article/3192135e252e4b9cac0e17037b36f922
Publikováno v:
Journal of Integrative Bioinformatics, Vol 15, Iss 1 (2018)
Many software tools provide facilities for depicting reaction network diagrams in a visual form. Two aspects of such a visual diagram can be distinguished: the layout (i.e.: the positioning and connections) of the elements in the diagram, and the gra
Externí odkaz:
https://doaj.org/article/2c08b604510a4496a3f6183e10ded41b
Autor:
Bergmann Frank T., Cooper Jonathan, König Matthias, Moraru Ion, Nickerson David, Le Novère Nicolas, Olivier Brett G., Sahle Sven, Smith Lucian, Waltemath Dagmar
Publikováno v:
Journal of Integrative Bioinformatics, Vol 15, Iss 1 (2018)
The creation of computational simulation experiments to inform modern biological research poses challenges to reproduce, annotate, archive, and share such experiments. Efforts such as SBML or CellML standardize the formal representation of computatio
Externí odkaz:
https://doaj.org/article/bdcab993e50c47e18878a612d9a82014
Autor:
Hucka Michael, Bergmann Frank T., Dräger Andreas, Hoops Stefan, Keating Sarah M., Le Novère Nicolas, Myers Chris J., Olivier Brett G., Sahle Sven, Schaff James C., Smith Lucian P., Waltemath Dagmar, Wilkinson Darren J.
Publikováno v:
Journal of Integrative Bioinformatics, Vol 15, Iss 1 (2018)
Computational models can help researchers to interpret data, understand biological functions, and make quantitative predictions. The Systems Biology Markup Language (SBML) is a file format for representing computational models in a declarative form t
Externí odkaz:
https://doaj.org/article/a3668129df2e4adaab7bf98578596967