Zobrazeno 1 - 10
of 28
pro vyhledávání: '"Benoit Guibert"'
Autor:
Chloé Bessière, Haoliang Xue, Benoit Guibert, Anthony Boureux, Florence Rufflé, Julien Viot, Rayan Chikhi, Mikaël Salson, Camille Marchet, Thérèse Commes, Daniel Gautheret
Publikováno v:
Genome Biology, Vol 25, Iss 1, Pp 1-16 (2024)
Abstract Indexing techniques relying on k-mers have proven effective in searching for RNA sequences across thousands of RNA-seq libraries, but without enabling direct RNA quantification. We show here that arbitrary RNA sequences can be quantified in
Externí odkaz:
https://doaj.org/article/a609a092c730485c832b8c973417638f
Autor:
Raíssa Silva, Cédric Riedel, Benoit Guibert, Florence Ruffle, Anthony Boureux, Thérèse Commes
MotivationAcute Myeloid Leukemia is a highly heterogeneous disease. Although current classifications are well-known and widely adopted, many patients experience drug resistance and disease relapse. New biomarkers are needed to make classifications mo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ec35f0450e980f992c249acaf096d9b8
https://doi.org/10.1101/2023.01.31.23285241
https://doi.org/10.1101/2023.01.31.23285241
Autor:
Nicolas Gilbert, Thérèse Commes, Chloé Bessière, Anthony Boureux, Jérôme Audoux, Haoliang Xue, Benoit Guibert, Florence Ruffle, Sébastien Riquier, Anne-Laure Bougé, Daniel Gautheret
Publikováno v:
NAR Genomics and Bioinformatics
NAR Genomics and Bioinformatics, 2021, 3 (3), pp.lqab058. ⟨10.1093/nargab/lqab058⟩
NAR Genomics and Bioinformatics, 2021, 3 (3), pp.lqab058. ⟨10.1093/nargab/lqab058⟩
The huge body of publicly available RNA-sequencing (RNA-seq) libraries is a treasure of functional information allowing to quantify the expression of known or novel transcripts in tissues. However, transcript quantification commonly relies on alignme
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5c935fe62978966279f7f43f48e90b3b
https://doi.org/10.1101/2021.05.20.444982
https://doi.org/10.1101/2021.05.20.444982
Autor:
Sébastien, Riquier, Chloé, Bessiere, Benoit, Guibert, Anne-Laure, Bouge, Anthony, Boureux, Florence, Ruffle, Jérôme, Audoux, Nicolas, Gilbert, Haoliang, Xue, Daniel, Gautheret, Thérèse, Commes
Publikováno v:
NAR Genomics and Bioinformatics
The huge body of publicly available RNA-sequencing (RNA-seq) libraries is a treasure of functional information allowing to quantify the expression of known or novel transcripts in tissues. However, transcript quantification commonly relies on alignme
Publikováno v:
Computers in Biology and Medicine
Computers in Biology and Medicine, Elsevier, 2017, 87, pp.302-310. ⟨10.1016/j.compbiomed.2017.06.012⟩
Computers in Biology and Medicine, Elsevier, 2017, 87, pp.302-310
Computers in Biology and Medicine, Elsevier, 2017, 87, pp.302-310. ⟨10.1016/j.compbiomed.2017.06.012⟩
Computers in Biology and Medicine, Elsevier, 2017, 87, pp.302-310
International audience; In this article, we propose a segmentation algorithm for skin lesions in 3D high-frequency ultrasound images. The segmentation is done on melanoma and Basal-cell carcinoma tumors, the most common skin cancer types, and could b
Autor:
Anne-Laure, Bougé, Florence, Rufflé, Sébastien, Riquier, Benoit, Guibert, Jérôme, Audoux, Thérèse, Commes
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1769
RNA-Seq approach enables the detection and characterization of fusion or chimeric transcript associated to complex genome rearrangement. Until now, these events are classically identified at DNA level.Here we describe a complete procedure including a
Autor:
Anne-Laure Bougé, Florence Ruffle, Benoit Guibert, Thérèse Commes, Sébastien Riquier, Jérôme Audoux
Publikováno v:
Chromothripsis-Methods and Protocols
Franck Pellestor. Chromothripsis-Methods and Protocols, Humana Press, New York, NY-, pp.133-156, 2018, Hardcover ISBN 978-1-4939-7779-6 ; Softcover ISBN 978-1-4939-9283-6 ; eBook ISBN 978-1-4939-7780-2. ⟨10.1007/978-1-4939-7780-2_9⟩
Methods in Molecular Biology ISBN: 9781493977796
Franck Pellestor. Chromothripsis-Methods and Protocols, Humana Press, New York, NY-, pp.133-156, 2018, Hardcover ISBN 978-1-4939-7779-6 ; Softcover ISBN 978-1-4939-9283-6 ; eBook ISBN 978-1-4939-7780-2. ⟨10.1007/978-1-4939-7780-2_9⟩
Methods in Molecular Biology ISBN: 9781493977796
International audience; RNA-Seq approach enables the detection and characterization of fusion or chimeric transcript associated to complex genome rearrangement. Until now, these events are classically identified at DNA level.Here we describe a comple
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77a116eaeed173ca38564e9e0a66a7b7
https://hal.umontpellier.fr/hal-02503709
https://hal.umontpellier.fr/hal-02503709
Autor:
Philippe Delachartre, Marilys Almar, Benoit Guibert, Blaise Kevin Guepie, Matthieu Martin, Victor Lacrosaz
Publikováno v:
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics, 2018, 23 (1), pp.334-348. ⟨10.1109/JBHI.2018.2808413⟩
IEEE Journal of Biomedical and Health Informatics, Institute of Electrical and Electronics Engineers, 2018, 23 (1), pp.334-348. ⟨10.1109/JBHI.2018.2808413⟩
IEEE Journal of Biomedical and Health Informatics, 2018, 23 (1), pp.334-348. ⟨10.1109/JBHI.2018.2808413⟩
IEEE Journal of Biomedical and Health Informatics, Institute of Electrical and Electronics Engineers, 2018, 23 (1), pp.334-348. ⟨10.1109/JBHI.2018.2808413⟩
This paper addresses the detection of emboli from signals acquired with a new miniaturized and portable transcranial Doppler ultrasound device. The use of this device enables outpatient monitoring but increases the number of artifacts. These artifact
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f3520ca0705fa302a5fba21755155a90
https://hal.science/hal-01886915
https://hal.science/hal-01886915
Autor:
Philippe Delachartre, Gwendal Josse, Benoit Guibert, Bruno Sciolla, Thibaut Dambry, Jimmy Le Digabel
Publikováno v:
Computers in Biology and Medicine
Computers in Biology and Medicine, Elsevier, 2018, 103, pp.277-286. ⟨10.1016/j.compbiomed.2018.10.029⟩
Computers in Biology and Medicine, Elsevier, 2018, 103, pp.277-286. ⟨10.1016/j.compbiomed.2018.10.029⟩
International audience; Highlights• The signal statistics in 50 MHz high frequency ultrasound images of the dermis are studied accurately layer by layer.• An automatic, accurate segmentation method is developed, which is highly resistant to artif
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d384ca028232439503e6c086974f7579
https://hal.archives-ouvertes.fr/hal-01912609
https://hal.archives-ouvertes.fr/hal-01912609
Autor:
Philippe Delachartre, P. Ceccato, Benoit Guibert, Lester Cowell, Thibaut Dambry, Bruno Sciolla
Publikováno v:
Physics Procedia. 70:1177-1180
We propose a multi-purpose level-set segmentation algorithm to detect the boundary of tumors and tissues in high-frequency 3D ultrasound images of the skin. Whereas most proposed algorithms assume a specific (e.g. Rayleigh) distribution of the speckl