Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Benoît Castandet"'
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 6, Iss 9, Pp 2817-2827 (2016)
Although RNA-Seq has revolutionized transcript analysis, organellar transcriptomes are rarely assessed even when present in published datasets. Here, we describe the development and application of a rapid and convenient method, ChloroSeq, to delineat
Externí odkaz:
https://doaj.org/article/2d85983c1f0e4ae0b1da8cff1d2781b5
Publikováno v:
PLoS ONE, Vol 7, Iss 12, p e52644 (2012)
In plant mitochondria, gene expression of translatable mRNAs is a complex process with two critical steps, RNA editing and splicing. We studied the role of RNA editing on non-coding regions of the mat-r-nad1e-nad5c transcript from wheat mitochondria.
Externí odkaz:
https://doaj.org/article/ed5152759b114d81b4b956df91ac377c
Autor:
Benoît Castandet, Alejandro Araya
Publikováno v:
PLoS ONE, Vol 6, Iss 6, p e20867 (2011)
The mitochondrial transcriptome from land plants undergoes hundreds of specific C-to-U changes by RNA editing. These events are important since most of them occur in the coding region of mRNAs. One challenging question is to understand the mechanism
Externí odkaz:
https://doaj.org/article/64262a41a63c4be18b16fbb35fb3f140
Autor:
Marie-Laure Martin, Benoît Castandet, Stefano Colella, Christine Paysant-Le Roux, Kevin Baudry
Publikováno v:
Journal of visualized experiments : JoVE
Journal of visualized experiments : JoVE, 2022, 185, ⟨10.3791/62566⟩
Journal of visualized experiments : JoVE, 2022, 185, ⟨10.3791/62566⟩
International audience; The proper use of statistical modeling in NGS data analysis requires an advanced level of expertise. There has recently been a growing consensus on using generalized linear models for differential analysis of RNA-Seq data and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::726e8a0394533c064407feae9775a844
https://pubmed.ncbi.nlm.nih.gov/35969075
https://pubmed.ncbi.nlm.nih.gov/35969075
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2020, 38 (20), pp.7112-7121. ⟨10.1093/nar/gkq591⟩
Nucleic Acids Research, Oxford University Press, 2020, 38 (20), pp.7112-7121. ⟨10.1093/nar/gkq591⟩
International audience; Most plant mitochondria messenger RNAs (mRNAs) undergo editing through C-to-U conversions located mainly in exon sequences. However, some RNA editing events are found in non-coding regions at critical positions in the predicte
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c2e335c2c556a2b0aaad9697991f4eee
https://hal-cnrs.archives-ouvertes.fr/hal-03048203/document
https://hal-cnrs.archives-ouvertes.fr/hal-03048203/document
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2019, 47 (22), pp.11889-11905. ⟨10.1093/nar/gkz1059⟩
Nucleic Acids Research, 2019, 47 (22), pp.11889-11905. ⟨10.1093/nar/gkz1059⟩
Nucleic Acids Research, Oxford University Press, 2019, 47 (22), pp.11889-11905. ⟨10.1093/nar/gkz1059⟩
Nucleic Acids Research, 2019, 47 (22), pp.11889-11905. ⟨10.1093/nar/gkz1059⟩
Chloroplast transcription requires numerous quality control steps to generate the complex but selective mixture of accumulating RNAs. To gain insight into how this RNA diversity is achieved and regulated, we systematically mapped transcript ends by d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cfe4f7b64878b5635197872a4028a69c
https://hal.inrae.fr/hal-02946563
https://hal.inrae.fr/hal-02946563
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1829
Since its first use in plants in 2007, high-throughput RNA sequencing (RNA-Seq) has generated a vast amount of data for both model and nonmodel species. Organellar transcriptomes, however, are virtually always overlooked at the data analysis step. We
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::237b03730a34acb0527ef05153772e97
https://pubmed.ncbi.nlm.nih.gov/29987730
https://pubmed.ncbi.nlm.nih.gov/29987730
Publikováno v:
Methods in Molecular Biology ISBN: 9781493986538
Plastids
Plastids, 1829, Humana Press Inc., pp.19, 2018, Methods in Molecular Biology, 978-1-4939-8654-5; 978-1-4939-8653-8. ⟨10.1007/978-1-4939-8654-5_20⟩
Plastids
Plastids, 1829, Humana Press Inc., pp.19, 2018, Methods in Molecular Biology, 978-1-4939-8654-5; 978-1-4939-8653-8. ⟨10.1007/978-1-4939-8654-5_20⟩
International audience; Since its first use in plants in 2007, high-throughput RNA sequencing (RNA-Seq) has generated a vast amount of data for both model and nonmodel species. Organellar transcriptomes, however, are virtually always overlooked at th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c4165d965392b6e4f93e90f61d7fa7d2
https://doi.org/10.1007/978-1-4939-8654-5_20
https://doi.org/10.1007/978-1-4939-8654-5_20
Autor:
Andrea Higdon, David B. Stern, Ciarán Condon, Benoît Castandet, Laetitia Gilet, Amber M. Hotto
Publikováno v:
The Plant Cell. 27:724-740
RNase III proteins recognize double-stranded RNA structures and catalyze endoribonucleolytic cleavages that often regulate gene expression. Here, we characterize the functions of RNC3 and RNC4, two Arabidopsis thaliana chloroplast Mini-RNase III-like
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c17c5702944f7653ff5d7c403c25ad54
https://doi.org/10.1105/tpc.114.134452
https://doi.org/10.1105/tpc.114.134452
Publikováno v:
Current Genetics. 57:317-325
In the leptosporangiate fern Osmunda regalis, cox1 gene is disrupted by a 1071-nucleotide-long group I intron that is homologous to the Marchantia polymorpha cox1 intron 4 (cox1i395g1). This intron, which shares 89% sequence identity with its bryophy
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::066df01941568e5a55e40a23239ec869
https://doi.org/10.1007/s00294-011-0349-z
https://doi.org/10.1007/s00294-011-0349-z