Zobrazeno 1 - 10
of 170
pro vyhledávání: '"Benjamin P. Bowen"'
Autor:
Yang Tian, Yu Gao, Halbay Turumtay, Emine Akyuz Turumtay, Yen Ning Chai, Hemant Choudhary, Joon-Hyun Park, Chuan-Yin Wu, Christopher M. De Ben, Jutta Dalton, Katherine B. Louie, Thomas Harwood, Dylan Chin, Khanh M. Vuu, Benjamin P. Bowen, Patrick M. Shih, Edward E. K. Baidoo, Trent R. Northen, Blake A. Simmons, Robert Hutmacher, Jackie Atim, Daniel H. Putnam, Corinne D. Scown, Jenny C. Mortimer, Henrik V. Scheller, Aymerick Eudes
Publikováno v:
Biotechnology for Biofuels and Bioproducts, Vol 17, Iss 1, Pp 1-16 (2024)
Abstract Background Lignin is an aromatic polymer deposited in secondary cell walls of higher plants to provide strength, rigidity, and hydrophobicity to vascular tissues. Due to its interconnections with cell wall polysaccharides, lignin plays impor
Externí odkaz:
https://doaj.org/article/0ca54f0577224f1fabb4d3ef015fb5ed
Autor:
Daniel F. Caddell, Dean Pettinga, Katherine Louie, Benjamin P. Bowen, Julie A. Sievert, Joy Hollingsworth, Rebeckah Rubanowitz, Jeffery Dahlberg, Elizabeth Purdom, Trent Northen, Devin Coleman-Derr
Publikováno v:
Phytobiomes Journal, Vol 7, Iss 4, Pp 449-463 (2023)
Plant-associated microbial communities shift in composition as a result of environmental perturbations, such as drought. It has been shown that Actinobacteria are enriched in plant roots and rhizospheres during drought stress. However, the correlatio
Externí odkaz:
https://doaj.org/article/a5d53d77dc53466aac49cd2ff4b798f1
Autor:
Thomas V. Harwood, Daniel G. C. Treen, Mingxun Wang, Wibe de Jong, Trent R. Northen, Benjamin P. Bowen
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-6 (2023)
Abstract Metabolomics has a long history of using cosine similarity to match experimental tandem mass spectra to databases for compound identification. Here we introduce the Blur-and-Link (BLINK) approach for scoring cosine similarity. By bypassing f
Externí odkaz:
https://doaj.org/article/e8b228ebb8e4482e80a2210cf79c55b0
Autor:
Cristina Howard-Varona, Simon Roux, Benjamin P. Bowen, Leslie P. Silva, Rebecca Lau, Sarah M. Schwenck, Samuel Schwartz, Tanja Woyke, Trent Northen, Matthew B. Sullivan, Sheri A. Floge
Publikováno v:
ISME Communications, Vol 2, Iss 1, Pp 1-14 (2022)
Abstract The fate of oceanic carbon and nutrients depends on interactions between viruses, prokaryotes, and unicellular eukaryotes (protists) in a highly interconnected planktonic food web. To date, few controlled mechanistic studies of these interac
Externí odkaz:
https://doaj.org/article/6c9dc62f02ee444eb7d4a73fcbe536d0
Autor:
Oseias R. Feitosa-Junior, Andrea Lubbe, Suzanne M. Kosina, Joaquim Martins-Junior, Deibs Barbosa, Clelia Baccari, Paulo A. Zaini, Benjamin P. Bowen, Trent R. Northen, Steven E. Lindow, Aline M. da Silva
Publikováno v:
Metabolites, Vol 14, Iss 2, p 82 (2024)
Microbial competition within plant tissues affects invading pathogens’ fitness. Metabolomics is a great tool for studying their biochemical interactions by identifying accumulated metabolites. Xylella fastidiosa, a Gram-negative bacterium causing P
Externí odkaz:
https://doaj.org/article/bbe6b67e5ab848278bde5b94625a2b5d
Autor:
Daniel G. C. Treen, Mingxun Wang, Shipei Xing, Katherine B. Louie, Tao Huan, Pieter C. Dorrestein, Trent R. Northen, Benjamin P. Bowen
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-10 (2022)
Interrelating metabolites by their fragmentation spectra is central to metabolomics. Here the authors align fragmentation spectra with both statistical significance and allowance for multiple chemical differences using Significant Interrelation of MS
Externí odkaz:
https://doaj.org/article/28bb7180c9054fd7b3d15e5a10010607
Autor:
Marc W. Van Goethem, Andrew R. Osborn, Benjamin P. Bowen, Peter F. Andeer, Tami L. Swenson, Alicia Clum, Robert Riley, Guifen He, Maxim Koriabine, Laura Sandor, Mi Yan, Chris G. Daum, Yuko Yoshinaga, Thulani P. Makhalanyane, Ferran Garcia-Pichel, Axel Visel, Len A. Pennacchio, Ronan C. O’Malley, Trent R. Northen
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-10 (2021)
Marc Van Goethem et al. combine short- and long-read sequencing from biocrust samples to report nearly 3,000 biosynthetic gene clusters (BGCs) encoding microbial secondary metabolites. Their results demonstrate the advantage of integrated metatranscr
Externí odkaz:
https://doaj.org/article/eae224afa2b747cc9f684dcc3d7db239
Autor:
Ying Wang, Roland C. Wilhelm, Tami L. Swenson, Anita Silver, Peter F. Andeer, Amber Golini, Suzanne M. Kosina, Benjamin P. Bowen, Daniel H. Buckley, Trent R. Northen
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
Microorganisms have evolved various life-history strategies to survive fluctuating resource conditions in soils. However, it remains elusive how the life-history strategies of microorganisms influence their processing of organic carbon, which may aff
Externí odkaz:
https://doaj.org/article/96d3081c2fdb44d0bf1bfb035c5ee66b
Autor:
Sara Calhoun, Tisza Ann Szeremy Bell, Lukas R. Dahlin, Yuliya Kunde, Kurt LaButti, Katherine B. Louie, Andrea Kuftin, Daniel Treen, David Dilworth, Sirma Mihaltcheva, Christopher Daum, Benjamin P. Bowen, Trent R. Northen, Michael T. Guarnieri, Shawn R. Starkenburg, Igor V. Grigoriev
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-15 (2021)
Sara Calhoun, Tisza Ann Szeremy Bell, Lukas Dahlin and colleagues characterize the growth and biomass accumulation of a halotolerant microalga Scenedesmus sp. NREL 46B-D3. They sequenced the genome and profiled the transcriptomic and metabolomic resp
Externí odkaz:
https://doaj.org/article/9c63e3da0b6346f6bef149201df4347e
Autor:
Katherine M. Murphy, Joseph Edwards, Katherine B. Louie, Benjamin P. Bowen, Venkatesan Sundaresan, Trent R. Northen, Philipp Zerbe
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-13 (2021)
Abstract Plants deploy both primary and species-specific, specialized metabolites to communicate with other organisms and adapt to environmental challenges, including interactions with soil-dwelling microbial communities. However, the role of special
Externí odkaz:
https://doaj.org/article/1c1dd7d553454d948130e0814ea46603