Zobrazeno 1 - 10
of 83
pro vyhledávání: '"Benjamin J. Binder"'
Autor:
Kai Li, J Edward F Green, Hayden Tronnolone, Alexander K Y Tam, Andrew J Black, Jennifer M Gardner, Joanna F Sundstrom, Vladimir Jiranek, Benjamin J Binder
Publikováno v:
PLoS Computational Biology, Vol 20, Iss 11, p e1012605 (2024)
We combine an off-lattice agent-based mathematical model and experimentation to explore filamentous growth of a yeast colony. Under environmental stress, Saccharomyces cerevisiae yeast cells can transition from a bipolar (sated) to unipolar (pseudohy
Externí odkaz:
https://doaj.org/article/363142b3aa7b4bd9baea5b9aba73b3e4
Autor:
Hayden Tronnolone, Jennifer M Gardner, Joanna F Sundstrom, Vladimir Jiranek, Stephen G Oliver, Benjamin J Binder
Publikováno v:
PLoS Computational Biology, Vol 14, Iss 12, p e1006629 (2018)
Many microbes are studied by examining colony morphology via two-dimensional top-down images. The quantification of such images typically requires each pixel to be labelled as belonging to either the colony or background, producing a binary image. Wh
Externí odkaz:
https://doaj.org/article/28270257ca1b45c7872c38ad4f418d05
Publikováno v:
Nature Computational Science. 1:754-766
Off-lattice models are a well-established approach in multicellular modeling, where cells are represented as points that are free to move in space. The representation of cells as point objects is useful in a wide range of settings, particularly when
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::2ce2119905b7d9fa8f4ce716994525c2
https://doi.org/10.1038/s43588-021-00154-4
https://doi.org/10.1038/s43588-021-00154-4
Publikováno v:
Royal Society Open Science, Vol 5, Iss 10 (2018)
Pseudohyphal growth of the dimorphic yeast Saccharomyces cerevisiae is analysed using two-dimensional top-down binary images. The colony morphology is characterized using clustered shape primitives (CSPs), which are learned automatically from the dat
Externí odkaz:
https://doaj.org/article/427234a477254326820feb7883cbf0e3
Autor:
Benjamin J. Binder
Publikováno v:
Fluids, Vol 4, Iss 1, p 24 (2019)
Two-dimensional free-surface flow past disturbances in an open channel is a classical problem in hydrodynamics—a problem that has received considerable attention over the last two centuries (e.g., see Lamb’s Treatise, 1879). With traces back to R
Externí odkaz:
https://doaj.org/article/5821a3aa32024b1ea804fbbde596a314
Autor:
Brendan Harding, Benjamin J. Binder, Alexander K. Y. Tam, J. Edward F. Green, Sanjeeva Balasuriya
Understanding microbial biofilm growth is important to public health, because biofilms are a leading cause of persistent clinical infections. In this paper, we develop a thin-film model for microbial biofilm growth on a solid substratum to which it a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6111e6386497ecb4893f808dd95de30e
https://doi.org/10.1101/2021.11.16.468738
https://doi.org/10.1101/2021.11.16.468738
Autor:
Benjamin J Binder, Joanna F Sundstrom, Jennifer M Gardner, Vladimir Jiranek, Stephen G Oliver
Publikováno v:
PLoS Computational Biology, Vol 11, Iss 2, p e1004070 (2015)
The top-view, two-dimensional spatial patterning of non-uniform growth in a Saccharomyces cerevisiae yeast colony is considered. Experimental images are processed to obtain data sets that provide spatial information on the cell-area that is occupied
Externí odkaz:
https://doaj.org/article/e9f4e0f2c2f549b3bf38ced4e24d2dee
Autor:
Benjamin J. Binder, Matthew J. Simpson
Publikováno v:
Royal Society Open Science, Vol 2, Iss 2 (2015)
Images from cell biology experiments often indicate the presence of cell clustering, which can provide insight into the mechanisms driving the collective cell behaviour. Pair-correlation functions provide quantitative information about the presence,
Externí odkaz:
https://doaj.org/article/3790e69f3b0f4e0688d15062608114ff
Autor:
Alexander K. Y. Tam, Brendan Harding, J. Edward F. Green, Sanjeeva Balasuriya, Benjamin J. Binder
Publikováno v:
Physical review. E. 105(1-1)
Understanding microbial biofilm growth is important to public health because biofilms are a leading cause of persistent clinical infections. In this paper, we develop a thin-film model for microbial biofilm growth on a solid substratum to which it ad
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::704f62e3375680454bf3c665ef2c32f8
https://pubmed.ncbi.nlm.nih.gov/35193209
https://pubmed.ncbi.nlm.nih.gov/35193209
Multi-cellular modelling, where tissues and organs are represented by a collection of individual interacting agents, is a well established field, encapsulating several different approaches. In particular, off-lattice models, which represent cells usi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::91f733564e57f64db4543d50918599a4
https://doi.org/10.1101/2021.02.10.430170
https://doi.org/10.1101/2021.02.10.430170