Investigating genotype by environment interaction for beef cattle fertility traits in commercial herds in northern Australia with multi-trait analysis

Autor: James P. Copley, Benjamin J. Hayes, Elizabeth M. Ross, Shannon Speight, Geoffry Fordyce, Benjamin J. Wood, Bailey N. Engle

Publikováno v: Genetics Selection Evolution, Vol 56, Iss 1, Pp 1-14 (2024)

Abstract Background Genotype by environment interactions (GxE) affect a range of production traits in beef cattle. Quantifying the effect of GxE in commercial and multi-breed herds is challenging due to unknown genetic linkage between animals across

Externí odkaz: https://doaj.org/article/378e4f5cacee440bad7546d4336ab4ae

A multi-trait Bayesian method for mapping QTL and genomic prediction

Autor: Kathryn E. Kemper, Philip J. Bowman, Benjamin J. Hayes, Peter M. Visscher, Michael E. Goddard

Publikováno v: Genetics Selection Evolution, Vol 50, Iss 1, Pp 1-13 (2018)

Abstract Background Genomic prediction and quantitative trait loci (QTL) mapping typically analyze one trait at a time but this may ignore the possibility that one polymorphism affects multiple traits. The aim of this study was to develop a multivari

Externí odkaz: https://doaj.org/article/1ffc221cc5214a1aa472ee706676544b

Environmental variation effects fertility in tropical beef cattle

Autor: James P Copley, Bailey N Engle, Elizabeth M Ross, Shannon Speight, Geoffry Fordyce, Benjamin J Wood, Kai P Voss-Fels, Benjamin J Hayes

Publikováno v: Translational Animal Science. 6

The northern Australia beef cattle industry operates in harsh environmental conditions which consistently suppress female fertility. To better understand the environmental effect on cattle raised extensively in northern Australia, new environmental d

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0aa31057292a96e6909c7a7be2aa4bb
https://doi.org/10.1093/tas/txac035

Quantifying the contribution of sequence variants with regulatory and evolutionary significance to 34 bovine complex traits

Autor: Min Wang, Michael E. Goddard, Hans D. Daetwyler, Zhiqian Liu, Sunduimijid Bolormaa, Coralie M. Reich, Christy J. Vander Jagt, Amanda J. Chamberlain, Irene van den Berg, Claire P. Prowse-Wilkins, Iona M. MacLeod, Brett A. Mason, Benjamin J. Hayes, Mogens Sandø Lund, Simone Rochfort, Ruidong Xiang

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America
Xiang, R, Van Den Berg, I, MacLeod, I M, Hayes, B J, Prowse-Wilkins, C P, Wang, M, Bolormaa, S, Liu, Z, Rochfort, S J, Reich, C M, Mason, B A, Vander Jagt, C J, Daetwyler, H D, Lund, M S, Chamberlain, A J & Goddard, M E 2019, ' Quantifying the contribution of sequence variants with regulatory and evolutionary significance to 34 bovine complex traits ', Proceedings of the National Academy of Sciences of the United States of America, vol. 116, no. 39, pp. 19398-19408 . https://doi.org/10.1073/pnas.1904159116

Significance The extent to which variants with genome regulatory and evolutionary roles affect mammalian phenotypes is unclear. We systemically analyzed large datasets covering genomics, transcriptomics, epigenomics, metabolomics, and 34 phenotypes i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3722476447b64bcac7bc6cd40623707e
http://europepmc.org/articles/PMC6765237

Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae

Autor: Daniele Bigi, Fiona Menzi, Slim Ben Jemaa, Marie-Christine Deloche, Aurélien Capitan, Johannes A. Lenstra, Marina Naval-Sanchez, Ivica Medugorac, Nathalie Hirter, Gwenola Tosser-Klopp, Diane Esquerre, Coralie M. Reich, Julia M. Paris, Rose-Marie Arbogast, Amandine Blin, Abdelhak Boukadiri, Aurélie Hintermann, Julie Rivière, Denis Duboule, Raphaël Cornette, Cécile Donnadieu, Marie-Dominique Wandhammer, Gjoko Bunevski, Louisa Gidney, Michael Stache, Isabelle Palhiere, Renate Schafberg, James Kijas, Claude Guintard, Joséphine Lesur, Jozsef Zakany, Rachel Rupp, Noelle E. Cockett, John Hedges, Ashleigh Haruda, Philippe Bardou, Olivier Putelat, Tracy Hadfield, Alain Pinton, Ockert Greyvenstein, Aurélie Allais-Bonnet, Este Van Marle-Koster, Eric Pailhoux, Coralie Danchin-Burge, David G. Riley, Cécile Grohs, Benjamin J. Hayes, Cord Drögemüller

Publikováno v: Molecular Biology and Evolution
Molecular Biology and Evolution, Oxford University Press (OUP), 2021, ⟨10.1093/molbev/msab021⟩
Allais-Bonnet, Aurélie; Hintermann, Aurélie; Deloche, Marie-Christine; Cornette, Raphaël; Bardou, Philippe; Naval-Sanchez, Marina; Pinton, Alain; Haruda, Ashleigh; Grohs, Cécile; Zakany, Jozsef; Bigi, Daniele; Medugorac, Ivica; Putelat, Olivier; Greyvenstein, Ockert; Hadfield, Tracy; Jemaa, Slim Ben; Bunevski, Gjoko; Menzi, Fiona; Hirter, Nathalie; Paris, Julia M; ... (2021). Analysis of Polycerate Mutants Reveals the Evolutionary Co-option of HOXD1 for Horn Patterning in Bovidae. Molecular Biology and Evolution, 38(6), pp. 2260-2272. Oxford University Press 10.1093/molbev/msab021
Molecular Biology and Evolution, 2021, ⟨10.1093/molbev/msab021⟩
Molecular Biology and Evolution, 38(6), 2260. Oxford University Press

In the course of evolution, pecorans (i.e., higher ruminants) developed a remarkable diversity of osseous cranial appendages, collectively referred to as “headgear,” which likely share the same origin and genetic basis. However, the nature and fu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e81f9ba5bd3ae8e59d2ce96dcb31adc
https://hal.archives-ouvertes.fr/hal-03164832/file/msab021.pdf