Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Benjamin Callahan"'
Autor:
Jessie L Maier, Craig Gin, Benjamin Callahan, Emma K Sheriff, Breck A Duerkop, Manuel Kleiner
Publikováno v:
PLoS Pathogens, Vol 20, Iss 6, p e1012301 (2024)
Salmonella enterica Serovar Typhimurium (Salmonella) and its bacteriophage P22 are a model system for the study of horizontal gene transfer by generalized transduction. Typically, the P22 DNA packaging machinery initiates packaging when a short seque
Externí odkaz:
https://doaj.org/article/9030f2f517a648eea97367966336161b
Autor:
Jennifer Halleran, Hannah Sylvester, Megan Jacob, Benjamin Callahan, Ronald Baynes, Derek Foster
Publikováno v:
Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)
Abstract The food animal sector’s use of antimicrobials is heavily critiqued for its role in allowing resistance to develop against critically important antimicrobials in human health. The WHO recommends using lower tier antimicrobials such as flor
Externí odkaz:
https://doaj.org/article/6211e3fb5f69436996a7180b04307c58
Publikováno v:
mSystems, Vol 9, Iss 3 (2024)
ABSTRACTThe resolution of variation within species is critical for interpreting and acting on many microbial measurements. In the key foodborne pathogens Salmonella and Escherichia coli, the primary subspecies classification scheme used is serotyping
Externí odkaz:
https://doaj.org/article/877f0fdeece4484e9f4a3513cdab62f3
Autor:
Caizhi Huang, Craig Gin, Jennifer Fettweis, Betsy Foxman, Bizu Gelaye, David A. MacIntyre, Akila Subramaniam, William Fraser, Negar Tabatabaei, Benjamin Callahan
Publikováno v:
BMC Biology, Vol 21, Iss 1, Pp 1-16 (2023)
Abstract Background High-throughput sequencing measurements of the vaginal microbiome have yielded intriguing potential relationships between the vaginal microbiome and preterm birth (PTB; live birth prior to 37 weeks of gestation). However, results
Externí odkaz:
https://doaj.org/article/d48dbfcec8004d8580dba99ae6e062b9
Autor:
Charlotte Manvell, Hanna Berman, Benjamin Callahan, Edward Breitschwerdt, William Swain, Kelli Ferris, Ricardo Maggi, Erin Lashnits
Publikováno v:
Parasites & Vectors, Vol 15, Iss 1, Pp 1-17 (2022)
Abstract Background Ctenocephalides felis, the cat flea, is the most common ectoparasite of cats and dogs worldwide. As a cause of flea allergy dermatitis and a vector for two genera of zoonotic pathogens (Bartonella and Rickettsia spp.), the effect
Externí odkaz:
https://doaj.org/article/55ed201fea9c4f93adf03120a85b8e33
Publikováno v:
PLoS Genetics, Vol 7, Iss 2, p e1001315 (2011)
Here we investigate the correlations between coding sequence substitutions as a function of their separation along the protein sequence. We consider both substitutions between the reference genomes of several Drosophilids as well as polymorphisms in
Externí odkaz:
https://doaj.org/article/b12e19aff3884b7a8066f88b9f55e3f7
Autor:
Ali Hakimzadeh, Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin Callahan, Gregory Caporaso, Emily Curd, Christophe DJEMIEL, Mikael Brandström Durling, Vasco Elbrecht, Zachary Gold, Hyun Gweon, Mehrdad Hajibabaei, Falk Hildebrand, Vladimir Mikryukov, Eric Normandeau, Ezgi Ozkurt, Jonathan M. Palmer, Géraldine Pascal, Teresita Porter, Daniel Straub, Martti Vasar, Tomáš Větrovský, Haris Zafeiropoulos, Sten Anslan
Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for monitoring biodiversity in ecology. However, taxa identifications produced through metabarcoding require sophisticated processing of high-throughput sequencing data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ef5a5babf4ba55ec4d4e3cc40def7c07
https://doi.org/10.22541/au.167610608.87815963/v1
https://doi.org/10.22541/au.167610608.87815963/v1
Autor:
Caizhi Huang, Craig Gin, Jennifer Fettweis, Betsy Foxman, Bizu Gelaye, David A. MacIntyre, Akila Subramaniam, William Fraser, Negar Tabatabaei, Benjamin Callahan
High-throughput sequencing measurements of the vaginal microbiome have yielded intriguing potential relationships between the vaginal microbiome and preterm birth (PTB; live birth prior to 37 weeks of gestation). However, results across studies have
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::7d14cc6c367cef3f454a74241423dabc
https://doi.org/10.1101/2022.09.26.22280389
https://doi.org/10.1101/2022.09.26.22280389
Differential-abundance (DA) analyses enable microbiome researchers to assess how microbial species vary in relative or absolute abundance with specific host or environmental conditions, such as health status or pH. These analyses typically use sequen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d75d1bbed9a750bdd3d16c3ad68f9779
https://doi.org/10.1101/2022.08.19.504330
https://doi.org/10.1101/2022.08.19.504330
Publikováno v:
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 21
This article presents a reproducible research workflow for amplicon-based microbiome studies in personalized medicine created using Bioconductor packages and the knitr markdown interface.We show that sometimes a multiplicity of choices and lack of co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::fa0bf2715c7896a4c81fd72ad4a0422c
https://pubmed.ncbi.nlm.nih.gov/26776185
https://pubmed.ncbi.nlm.nih.gov/26776185