Zobrazeno 1 - 10
of 53
pro vyhledávání: '"Benjamin A Neely"'
Autor:
Yuming Jiang, Devasahayam Arokia Balaya Rex, Dina Schuster, Benjamin A. Neely, Germán L. Rosano, Norbert Volkmar, Amanda Momenzadeh, Trenton M. Peters-Clarke, Susan B. Egbert, Simion Kreimer, Emma H. Doud, Oliver M. Crook, Amit Kumar Yadav, Muralidharan Vanuopadath, Adrian D. Hegeman, Martín L. Mayta, Anna G. Duboff, Nicholas M. Riley, Robert L. Moritz, Jesse G. Meyer
Publikováno v:
ACS Measurement Science Au, Vol 4, Iss 4, Pp 338-417 (2024)
Externí odkaz:
https://doaj.org/article/77b50bdc366d4ecc8281c0455ca0c0c7
Autor:
Benjamin A Neely, Christopher E Wilkins, Laura A Marlow, Dariya Malyarenko, Yunee Kim, Alexandr Ignatchenko, Heather Sasinowska, Maciek Sasinowski, Julius O Nyalwidhe, Thomas Kislinger, John A Copland, Richard R Drake
Publikováno v:
PLoS ONE, Vol 11, Iss 4, p e0154074 (2016)
Renal cell carcinoma comprises 2 to 3% of malignancies in adults with the most prevalent subtype being clear-cell RCC (ccRCC). This type of cancer is well characterized at the genomic and transcriptomic level and is associated with a loss of VHL that
Externí odkaz:
https://doaj.org/article/10369ea30c0d4d4086e6400209b1e76a
Autor:
Benjamin A Neely, Jason A Ferrante, J Mauro Chaves, Jennifer L Soper, Jonas S Almeida, John M Arthur, Frances M D Gulland, Michael G Janech
Publikováno v:
PLoS ONE, Vol 10, Iss 4, p e0123295 (2014)
Domoic acid toxicosis (DAT) in California sea lions (Zalophus californianus) is caused by exposure to the marine biotoxin domoic acid and has been linked to massive stranding events and mortality. Diagnosis is based on clinical signs in addition to t
Externí odkaz:
https://doaj.org/article/1b44b328402c4254a15f4d82dccb19ad
Autor:
Thomas W Powers, Benjamin A Neely, Yuan Shao, Huiyuan Tang, Dean A Troyer, Anand S Mehta, Brian B Haab, Richard R Drake
Publikováno v:
PLoS ONE, Vol 9, Iss 9, p e106255 (2014)
A recently developed matrix-assisted laser desorption/ionization imaging mass spectrometry (MALDI-IMS) method to spatially profile the location and distribution of multiple N-linked glycan species in frozen tissues has been extended and improved for
Externí odkaz:
https://doaj.org/article/e15c1bdcd01b4c9d9f46f9fab38c100c
Publikováno v:
Frontiers in Endocrinology, Vol 4 (2013)
High molecular weight (HMW) adiponectin levels are reduced in humans with type 2 diabetes and insulin resistance. Similar to humans with insulin resistance, managed bottlenose dolphins (Tursiops truncatus) diagnosed with hemochromatosis (iron overloa
Externí odkaz:
https://doaj.org/article/3a66dba21805477d9af3de352bcdc815
Autor:
Rob Marissen, Madhushri S. Varunjikar, Jeroen F. J. Laros, Josef D. Rasinger, Benjamin A. Neely, Magnus Palmblad
Publikováno v:
Journal of Proteome Research, 22(2), 514-519. AMER CHEMICAL SOC
Journal of Proteome Research
Journal of Proteome Research
It has long been known that biological species can be identified from mass spectrometry data alone. Ten years ago, we described a method and software tool, compareMS2, for calculating a distance between sets of tandem mass spectra, as routinely colle
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88ac8819bc3357a8d9cd16cc69a9c611
https://doi.org/10.1021/acs.jproteome.2c00457
https://doi.org/10.1021/acs.jproteome.2c00457
Autor:
Benjamin A. Neely, Viktoria Dorfer, Lennart Martens, Isabell Bludau, Robbin Bouwmeester, Sven Degroeve, Eric W. Deutsch, Siegfried Gessulat, Lukas Käll, Pawel Palczynski, Samuel H. Payne, Tobias Greisager Rehfeldt, Tobias Schmidt, Veit Schwämmle, Julian Uszkoreit, Juan Antonio Vizcaíno, Mathias Wilhelm, Magnus Palmblad
Publikováno v:
JOURNAL OF PROTEOME RESEARCH
Journal of Proteome Research, 22(3), 681-696. AMER CHEMICAL SOC
Journal of Proteome Research, 22(3), 681-696. AMER CHEMICAL SOC
In recent years machine learning has made extensive progress in modeling many aspects of mass spectrometry data. We brought together proteomics data generators, repository managers, and machine learning experts in a workshop with the goals to evaluat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dfc4ca9a0380127a89a8b4a6f3f41108
https://hdl.handle.net/1887/3590801
https://hdl.handle.net/1887/3590801
Autor:
Tobias G. Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno, Eric W. Deutsch
Publikováno v:
Journal of Proteome Research, 22(2), 632-636. AMER CHEMICAL SOC
JOURNAL OF PROTEOME RESEARCH
JOURNAL OF PROTEOME RESEARCH
Data set acquisition and curation are often the most difficult and time-consuming parts of a machine learning endeavor. This is especially true for proteomics-based liquid chromatography (LC) coupled to mass spectrometry (MS) data sets, due to the hi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::836e703fc3403d47ed95c4b6be9f9465
https://hdl.handle.net/1887/3593850
https://hdl.handle.net/1887/3593850
Autor:
Cassandra L. Pegg, Benjamin L. Schulz, Benjamin A. Neely, Gregory F. Albery, Colin J. Carlson
Publikováno v:
Molecular ecologyREFERENCES.
The sugars that coat the outsides of viruses and host cells are key to successful disease transmission, but they remain understudied compared to other molecular features. Understanding the comparative zoology of glycosylation - and harnessing it for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::65bfbea5aee65da0fc274fea64801008
https://pubmed.ncbi.nlm.nih.gov/36217579
https://pubmed.ncbi.nlm.nih.gov/36217579
Autor:
Jochen B. W. Wolf, Alan Tracey, Matthew Breen, Saurabh D. Pophaly, Claire R. Peart, Jonathan Wood, Christina L. Williams, Bee Ling Ng, Benjamin A. Neely, David J. Adams, James Torrance, Jeremy A. Johnson, Arkarachai Fungtammasan, Joanna Collins, Kerstin Howe, William Cheng, Olivier Fedrigo, Arang Rhie, Bettina Haase, Ying Sims, Frances M. D. Gulland, Erich D. Jarvis, Joseph I. Hoffman, Michael E. Goebel, Jacquelyn Mountcastle, Giulio Formenti
Publikováno v:
Molecular Ecology Resources. 21:2455-2470
With the advent of chromatin-interaction maps, chromosome-level genome assemblies have become a reality for a wide range of organisms. Scaffolding quality is, however, difficult to judge. To explore this gap, we generated multiple chromosome-scale ge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f04f617e4be1f4d187476ff19f9d0a9
https://doi.org/10.1111/1755-0998.13443
https://doi.org/10.1111/1755-0998.13443