Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Benjamin Kipp"'
Autor:
Jesse R. Walsh, Guangchao Sun, Jagadheshwar Balan, Jayson Hardcastle, Jason Vollenweider, Calvin Jerde, Kandelaria Rumilla, Christy Koellner, Alaa Koleilat, Linda Hasadsri, Benjamin Kipp, Garrett Jenkinson, Eric Klee
Publikováno v:
BMC Bioinformatics, Vol 25, Iss 1, Pp 1-15 (2024)
Abstract Background DNA methylation is one of the most stable and well-characterized epigenetic alterations in humans. Accordingly, it has already found clinical utility as a molecular biomarker in a variety of disease contexts. Existing methods for
Externí odkaz:
https://doaj.org/article/8c89ef322c5e46f29c5cfcbc2677a92d
Autor:
Binsheng Gong, Dan Li, Rebecca Kusko, Natalia Novoradovskaya, Yifan Zhang, Shangzi Wang, Carlos Pabón-Peña, Zhihong Zhang, Kevin Lai, Wanshi Cai, Jennifer S. LoCoco, Eric Lader, Todd A. Richmond, Vinay K. Mittal, Liang-Chun Liu, Donald J. Johann, James C. Willey, Pierre R. Bushel, Ying Yu, Chang Xu, Guangchun Chen, Daniel Burgess, Simon Cawley, Kristina Giorda, Nathan Haseley, Fujun Qiu, Katherine Wilkins, Hanane Arib, Claire Attwooll, Kevin Babson, Longlong Bao, Wenjun Bao, Anne Bergstrom Lucas, Hunter Best, Ambica Bhandari, Halil Bisgin, James Blackburn, Thomas M. Blomquist, Lisa Boardman, Blake Burgher, Daniel J. Butler, Chia-Jung Chang, Alka Chaubey, Tao Chen, Marco Chierici, Christopher R. Chin, Devin Close, Jeffrey Conroy, Jessica Cooley Coleman, Daniel J. Craig, Erin Crawford, Angela del Pozo, Ira W. Deveson, Daniel Duncan, Agda Karina Eterovic, Xiaohui Fan, Jonathan Foox, Cesare Furlanello, Abhisek Ghosal, Sean Glenn, Meijian Guan, Christine Haag, Xinyi Hang, Scott Happe, Brittany Hennigan, Jennifer Hipp, Huixiao Hong, Kyle Horvath, Jianhong Hu, Li-Yuan Hung, Mirna Jarosz, Jennifer Kerkhof, Benjamin Kipp, David Philip Kreil, Paweł Łabaj, Pablo Lapunzina, Peng Li, Quan-Zhen Li, Weihua Li, Zhiguang Li, Yu Liang, Shaoqing Liu, Zhichao Liu, Charles Ma, Narasimha Marella, Rubén Martín-Arenas, Dalila B. Megherbi, Qingchang Meng, Piotr A. Mieczkowski, Tom Morrison, Donna Muzny, Baitang Ning, Barbara L. Parsons, Cloud P. Paweletz, Mehdi Pirooznia, Wubin Qu, Amelia Raymond, Paul Rindler, Rebecca Ringler, Bekim Sadikovic, Andreas Scherer, Egbert Schulze, Robert Sebra, Rita Shaknovich, Qiang Shi, Tieliu Shi, Juan Carlos Silla-Castro, Melissa Smith, Mario Solís López, Ping Song, Daniel Stetson, Maya Strahl, Alan Stuart, Julianna Supplee, Philippe Szankasi, Haowen Tan, Lin-ya Tang, Yonghui Tao, Shraddha Thakkar, Danielle Thierry-Mieg, Jean Thierry-Mieg, Venkat J. Thodima, David Thomas, Boris Tichý, Nikola Tom, Elena Vallespin Garcia, Suman Verma, Kimbley Walker, Charles Wang, Junwen Wang, Yexun Wang, Zhining Wen, Valtteri Wirta, Leihong Wu, Chunlin Xiao, Wenzhong Xiao, Shibei Xu, Mary Yang, Jianming Ying, Shun H. Yip, Guangliang Zhang, Sa Zhang, Meiru Zhao, Yuanting Zheng, Xiaoyan Zhou, Christopher E. Mason, Timothy Mercer, Weida Tong, Leming Shi, Wendell Jones, Joshua Xu
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-23 (2021)
Abstract Background Targeted sequencing using oncopanels requires comprehensive assessments of accuracy and detection sensitivity to ensure analytical validity. By employing reference materials characterized by the U.S. Food and Drug Administration-l
Externí odkaz:
https://doaj.org/article/c5365bb671514dddbb3d5b324f62ed28
Autor:
Saranya Sankaranarayanan, Jagadheshwar Balan, Jesse R Walsh, Yanhong Wu, Sara Minnich, Amy Piazza, Collin Osborne, Gavin R Oliver, Jessica Lesko, Kathy L Bates, Kia Khezeli, Darci R Block, Margaret DiGuardo, Justin Kreuter, John C O’Horo, John Kalantari, Eric W Klee, Mohamed E Salama, Benjamin Kipp, William G Morice, Garrett Jenkinson
Publikováno v:
Journal of Medical Internet Research, Vol 23, Iss 9, p e30157 (2021)
BackgroundCOVID-19 is caused by the SARS-CoV-2 virus and has strikingly heterogeneous clinical manifestations, with most individuals contracting mild disease but a substantial minority experiencing fulminant cardiopulmonary symptoms or death. The cli
Externí odkaz:
https://doaj.org/article/b187600fd8864b3e9abf55f9dffdd50e
Autor:
Zachary Stephens, Dragana Milosevic, Benjamin Kipp, Stefan Grebe, Ravishankar K. Iyer, Jean-Pierre A. Kocher
Publikováno v:
Frontiers in Genetics, Vol 12 (2021)
Long read sequencing technologies have the potential to accurately detect and phase variation in genomic regions that are difficult to fully characterize with conventional short read methods. These difficult to sequence regions include several clinic
Externí odkaz:
https://doaj.org/article/b11181a9f8864e89816d3eb364e98c24
Autor:
Lipika Goyal, Vikram Deshpande, David T. Ting, Benjamin Kipp, William Sukov, Jochen K. Lennerz, Emily G. Barr Fritcher, Stephanie Reyes, Islam Baiev, Abhijit Chogule, Azfar Neyaz, Vishwajith Sridharan
Purpose:Selective FGFR inhibitors are effective against cholangiocarcinomas that harbor gene alterations in FGFR2. Clinical trials suggest that expression of wild-type FGFR mRNA can predict sensitivity to FGFR inhibitors, but this biomarker has not b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::17bd016bb3368d871c39738bbef7d9bd
https://doi.org/10.1158/1078-0432.c.6532707.v1
https://doi.org/10.1158/1078-0432.c.6532707.v1
Autor:
Vishwajith Sridharan, Azfar Neyaz, Abhijit Chogule, Islam Baiev, Stephanie Reyes, Emily G. Barr Fritcher, Jochen K. Lennerz, William Sukov, Benjamin Kipp, David T. Ting, Vikram Deshpande, Lipika Goyal
Publikováno v:
Clinical cancer research : an official journal of the American Association for Cancer Research. 28(24)
Purpose: Selective FGFR inhibitors are effective against cholangiocarcinomas that harbor gene alterations in FGFR2. Clinical trials suggest that expression of wild-type FGFR mRNA can predict sensitivity to FGFR inhibitors, but this biomarker has not
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fd76d7d964bb06650443dcff97830da2
https://pubmed.ncbi.nlm.nih.gov/36190545
https://pubmed.ncbi.nlm.nih.gov/36190545
Autor:
Jorge Trejo-Lopez, Thomas Kollmeyer, Corinne Praska, Aditya Raghunathan, Caterina Giannini, Rachael Vaubel, Aivi Nguyen, Mark Jentoft, Kliment Donev, Gang Zheng, Margaret DiGuardo, Benjamin Kipp, Robert Jenkins, Cristiane Ida
Publikováno v:
Neuro-Oncology. 24:vii152-vii152
Diffuse hemispheric glioma, H3 G34-mutant (DHG_H3G34) is a novel tumor type in the 2021 WHO CNS classification. We describe a comprehensive sequencing and high-resolution genome-wide copy number analysis of a series of cases clinically tested by a si
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::13c9fb878e96955f28a2590537106546
https://doi.org/10.1093/neuonc/noac209.585
https://doi.org/10.1093/neuonc/noac209.585
Autor:
Rachael Vaubel, Rahul Kumar, Taylor Weiskittel, Sarah Jenkins, Surendra Dasari, Joon Uhm, Daniel Honore Lachance, Paul Brown, Jamie Van Gompel, Benjamin Kipp, William Sukov, Caterina Giannini, Derek Johnson, Aditya Raghunathan
Publikováno v:
Neuro-Oncology. 24:vii158-vii158
Atypical meningiomas (CNS WHO grade 2) show an intermediate risk of recurrence/progression, and molecular parameters informing management following gross total resection (GTR) remain to be established. We performed comprehensive genomic analysis in 6
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::de551de861160cbcb27d7c2a065acafd
https://doi.org/10.1093/neuonc/noac209.609
https://doi.org/10.1093/neuonc/noac209.609
Autor:
Saranya Sankaranarayanan, Jagadheshwar Balan, Jesse R Walsh, Yanhong Wu, Sara Minnich, Amy Piazza, Collin Osborne, Gavin R Oliver, Jessica Lesko, Kathy L Bates, Kia Khezeli, Darci R Block, Margaret DiGuardo, Justin Kreuter, John C O’Horo, John Kalantari, Eric W Klee, Mohamed E Salama, Benjamin Kipp, William G Morice, Garrett Jenkinson
BACKGROUND COVID-19 is caused by the SARS-CoV-2 virus and has strikingly heterogeneous clinical manifestations, with most individuals contracting mild disease but a substantial minority experiencing fulminant cardiopulmonary symptoms or death. The cl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e618e3199b0aae12c0735cb3d8203771
https://doi.org/10.2196/preprints.30157
https://doi.org/10.2196/preprints.30157
Autor:
Beth Pitel, Reid Meyer, Kay Minn, Numrah Fadra, Asha Nair, Jaime Davila, Kathryn Pearce, Jesse Voss, Rhett Ketterling, William Sukov, Benjamin Kipp, Robert Jenkins, Kevin Halling, Katherine Geiersbach
Publikováno v:
Cancer Genetics. :12
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a2b38032522977ff61e8c37016adddd8
https://doi.org/10.1016/j.cancergen.2021.05.049
https://doi.org/10.1016/j.cancergen.2021.05.049